X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=2ce1743482297cf66d9cde681c71f7b071e429f4;hb=5e8e52baf2ac3df23cc3180a44425d0e05334b03;hp=52d8740d63db5318a4f3f56dad906c6437b70c49;hpb=ac5cc638b08386985f91503c81b27263230046e3;p=jalview.git

diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 52d8740..2ce1743 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -15,8 +15,9 @@ most likely prediction via a jury network. <br>
 sequence alignment profiles to improve protein secondary
 structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li></ul>
 </p>
-The function available from the <strong>Web Service&#8594;Secondary Structure 
-Prediction&#8594;Muscle Alignment </strong> menu does two different kinds of prediction, 
+The function available from the <strong>Web Service&#8594;Secondary
+Structure Prediction&#8594;JNet Secondary Structure 
+Prediction</strong> menu does two different kinds of prediction, 
 dependent upon the currently selected region:</p> 
 <ul>
 <li>If nothing is selected, and the displayed sequences appear to
@@ -32,7 +33,7 @@ for homolog detection and prediction.
 <li>If a set of sequences are selected, and they appear to be aligned,
 then the alignment will be used for a Jnet prediction on the
 <strong>first</strong> sequence selected in the set (that is, the one
-that was first clicked on).
+nearest the top of the alignment window).
 </li>      
 </ul>
 <p>The result of a JNet prediction for a sequence is a new annotated