- If nothing is selected, and the displayed sequences appear - to be aligned, then a JNet prediction will be run for the first + to be aligned, then a JPred prediction will be run for the first sequence in the alignment, using the current alignment. Otherwise the first sequence will be submitted for prediction.
- If just one sequence (or a region on one sequence) has been - selected, it will be submitted to the automatic JNet prediction + selected, it will be submitted to the automatic JPred prediction server for homolog detection and prediction.
- If a set of sequences are selected, and they appear to be - aligned, then the alignment will be used for a Jnet prediction on + aligned, then the alignment will be used for a JPred prediction on the first sequence selected in the set (that is, the one nearest the top of the alignment window).
- Note: JNet secondary structure prediction is a + Note: JPred secondary structure prediction is a 'non-column-separable' service - predictions are based on the sequence profile of contiguous stretches of amino-acid sequence. A prediction will only be made on the visible parts of a sequence (see hiding columns) as if it were a contiguous polypeptide chain. Prediction accuracy at the hidden column boundaries may therefore be less than indicated by - JNet's own reliability score (see below). + JPred's own reliability score (see below).
-The result of a JNet prediction for a sequence is a new +
The result of a JPred prediction for a sequence is a new annotated alignment window:
The sequence for which the prediction was made is the first one @@ -125,12 +124,12 @@ significantly different primary predictions.