X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=a94ec4486b3cbaf8ae8c5c5e738ebceb7b67bbd4;hb=91cb798a47b512b0ac3792fd3a84f2c5bd3c7218;hp=52d8740d63db5318a4f3f56dad906c6437b70c49;hpb=ac5cc638b08386985f91503c81b27263230046e3;p=jalview.git

diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 52d8740..a94ec44 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -8,16 +8,17 @@
 Secondary structure prediction methods attempts to infer the likely secondary
 structure for a protein based on its amino acid composition and
 similarity to sequences with known secondary structure. The JNet
-method uses several different prediction methods and decides on the
+method uses several different neural networks and decides on the
 most likely prediction via a jury network. <br>
 <ul>
 <li>Cuff J. A and Barton G.J (1999) Application of enhanced multiple
 sequence alignment profiles to improve protein secondary
 structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li></ul>
 </p>
-The function available from the <strong>Web Service&#8594;Secondary Structure 
-Prediction&#8594;Muscle Alignment </strong> menu does two different kinds of prediction, 
-dependent upon the currently selected region:</p> 
+The function available from the <strong>Web Service&#8594;Secondary
+Structure Prediction&#8594;JNet Secondary Structure
+Prediction</strong> menu does two different kinds of prediction,
+dependent upon the currently selected region:</p>
 <ul>
 <li>If nothing is selected, and the displayed sequences appear to
 be aligned, then a JNet prediction will be run for the first
@@ -32,8 +33,8 @@ for homolog detection and prediction.
 <li>If a set of sequences are selected, and they appear to be aligned,
 then the alignment will be used for a Jnet prediction on the
 <strong>first</strong> sequence selected in the set (that is, the one
-that was first clicked on).
-</li>      
+nearest the top of the alignment window).
+</li>
 </ul>
 <p>The result of a JNet prediction for a sequence is a new annotated
  alignment window:</p>