X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fjnet.html;h=cf914d3656b2c9fc24d53479406ddb26f964e012;hb=b8f13fd9ac44853d6510eac85edb60b117dc4620;hp=114fc331b652db293c4c66cc9bd2056b7dbac76c;hpb=c554d41a4effc6719895bda6b3abc04c032715a8;p=jalview.git
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 114fc33..cf914d3 100755
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,4 +1,24 @@
+
JNet Secondary Structure Prediction
@@ -10,11 +30,10 @@ composition and similarity to sequences with known secondary structure.
The JNet method uses several different neural networks and decides on
the most likely prediction via a jury network.
- -
- Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3 secondary structure prediction server
- Nucleic Acids Research 36 W197-W201
- -
- Cuff J. A and Barton G.J (1999) Application of enhanced
+
- Cole C., Barber J.D. and Barton G.J. (2008) The Jpred 3
+ secondary structure prediction server Nucleic Acids Research 36
+ W197-W201
+ - Cuff J. A and Barton G.J (1999) Application of enhanced
multiple sequence alignment profiles to improve protein secondary
structure prediction Proteins 40 502-511
@@ -91,5 +110,15 @@ The annotation bars below the alignment are as follows:
invoked to rationalise significantly different primary predictions.
+ JNet annotation created in Jalview 2.8.2 and later versions
+ can be displayed on other alignments via the Add reference
+ annotation Sequence ID popup menu option.
+
+ As of Jalview 2.6, the Jnet service accessed accessed via the
+'Secondary structure prediction' submenu should be considered a legacy
+Jalview SOAP service, and will be replaced in the near future by a
+JPred4 Rest service.
+