X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmafft.html;h=052e56573fcfac600fb142441e89a2de2cee7fec;hb=84be4eb6c9cf1ba25cebb64ae95979b9607ccaa3;hp=4ee0237a9fc93b2828919c1e324739044b9e52eb;hpb=e3f4349374e532d0f9bb2bc163ff1783ca030fd6;p=jalview.git diff --git a/help/html/webServices/mafft.html b/help/html/webServices/mafft.html index 4ee0237..052e565 100644 --- a/help/html/webServices/mafft.html +++ b/help/html/webServices/mafft.html @@ -1,18 +1,36 @@ - -MAFFT Multiple Sequence Alignments - -

MAFFT Multiple Sequence Alignments

-

Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version - 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids - Research, 33 511-518

-

MAFFT is a program for the multiple alignment of nucleic acid or protein -sequences, and is available from the Web -Service→Alignment→MAFFT Multiple Sequence -Alignment entry in the web services menu.

-

MAFFT utilizes algorithms for spectral correlation to identify -homologous regions in a fast-fourier transform representation of each -sequence. The Jalview web service runs MAFFT using the -'--auto' option which picks optimal parameters -for the set of sequences to be aligned.

- - + + +MAFFT Multiple Sequence Alignments + +

MAFFT Multiple Sequence Alignments

+

Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version + 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids + Research, 33 511-518

+

MAFFT is a program for the multiple alignment of nucleic acid or protein +sequences, and is available from the Web +Service→Alignment→MAFFT Multiple Sequence +Alignment entry in the web services menu.

+

MAFFT utilizes algorithms for spectral correlation to identify +homologous regions in a fast-fourier transform representation of each +sequence. The Jalview web service runs MAFFT using the +'--auto' option which picks optimal parameters +for the set of sequences to be aligned.

+As of Jalview 2.6, alignment services accessed via the 'Alignment' submenu should be considered legacy Jalview SOAP services. + +