X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmafft.html;h=052e56573fcfac600fb142441e89a2de2cee7fec;hb=ff4d98fbde57ca9dea2fc607d36d80a00963746d;hp=34ee58ba020feddb1832c620f59c8b115e79c886;hpb=26b6be40a56d769e5fc6b3349ef92985fe125756;p=jalview.git diff --git a/help/html/webServices/mafft.html b/help/html/webServices/mafft.html index 34ee58b..052e565 100644 --- a/help/html/webServices/mafft.html +++ b/help/html/webServices/mafft.html @@ -1,13 +1,36 @@ - -
MAFFT Alignments
-MAFFT is a program for the alignment of many protein sequences.
-Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version - 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids - Research, 33 511-518
-This alignment method is applied to the selected region, if any, or the whole - sequence set when the Web Service→Alignment→MAFFT Multiple - Sequence Alignment menu item is selected.
- - + + +MAFFT Multiple Sequence Alignments
+Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version + 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids + Research, 33 511-518
+MAFFT is a program for the multiple alignment of nucleic acid or protein +sequences, and is available from the Web +Service→Alignment→MAFFT Multiple Sequence +Alignment entry in the web services menu.
+MAFFT utilizes algorithms for spectral correlation to identify +homologous regions in a fast-fourier transform representation of each +sequence. The Jalview web service runs MAFFT using the +'--auto' option which picks optimal parameters +for the set of sequences to be aligned.
+As of Jalview 2.6, alignment services accessed via the 'Alignment' submenu should be considered legacy Jalview SOAP services. + +