X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmafft.html;h=4ee0237a9fc93b2828919c1e324739044b9e52eb;hb=4de388d1d73eb67fe9ccbfeb5f3483a0fe3052e8;hp=34ee58ba020feddb1832c620f59c8b115e79c886;hpb=26b6be40a56d769e5fc6b3349ef92985fe125756;p=jalview.git diff --git a/help/html/webServices/mafft.html b/help/html/webServices/mafft.html index 34ee58b..4ee0237 100644 --- a/help/html/webServices/mafft.html +++ b/help/html/webServices/mafft.html @@ -1,13 +1,18 @@ -MAFFT Alignment +MAFFT Multiple Sequence Alignments -

MAFFT Alignments

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MAFFT is a program for the alignment of many protein sequences.

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MAFFT Multiple Sequence Alignments

Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) "MAFFT version 5: improvement in accuracy of multiple sequence alignment." Nucleic Acids Research, 33 511-518

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This alignment method is applied to the selected region, if any, or the whole - sequence set when the Web Service→Alignment→MAFFT Multiple - Sequence Alignment menu item is selected.

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MAFFT is a program for the multiple alignment of nucleic acid or protein +sequences, and is available from the Web +Service→Alignment→MAFFT Multiple Sequence +Alignment entry in the web services menu.

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MAFFT utilizes algorithms for spectral correlation to identify +homologous regions in a fast-fourier transform representation of each +sequence. The Jalview web service runs MAFFT using the +'--auto' option which picks optimal parameters +for the set of sequences to be aligned.