X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=2fbbdbcfb61a056fe94624304cd38bfa9af742c9;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=b68557677a3e1d0a1fd004a51a04b0e9741a2f4d;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html
index b685576..2fbbdbc 100644
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -39,13 +39,13 @@
from the input
realignment - where any aligned sequences will be
used by the service to construct a profile based alignment of the
- remaining unaligned sequences.
+ remaining unaligned sequences
JABAWS Alignment services
Most alignment services are provided by the
JABAWS framework, which allows you to
customise the precise parameters used when running each alignment
- prgoram. In addition to the 'Default settings', you may choose from a
+ program. In addition to the 'Default settings', you may choose from a
range of alignment preset settings, or create your own using the
'Edit Settings And Run ..' dialog
box.
@@ -58,13 +58,13 @@
@@ -74,12 +74,11 @@
Multiple Alignments of Sequences with hidden
columns
Multiple alignment services are 'column
separable' analysis operations. If the input contains hidden columns then each visible segment of the input sequence
- set will be submitted for alignment separately, and the results
- concatenated (with the hidden regions preserved) once all alignment
- functions have completed. Each sub-job's state is reported in its
- own tab:
+ href="../features/hiddenRegions.html">hidden columns then
+ each visible segment of the input sequence set will be submitted for
+ alignment separately, and the results concatenated (with the hidden
+ regions preserved) once all alignment functions have completed. Each
+ sub-job's state is reported in its own tab:
Multiple Multiple Sequence Alignment sub jobs