X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=98fced119eb32493cc07299829612b8ab547e774;hb=c42bc457ef9b3a5606f309268d4a644ef113c390;hp=6fea43e7ea898cf48a9620a47359797748efc854;hpb=e3f4349374e532d0f9bb2bc163ff1783ca030fd6;p=jalview.git
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html
index 6fea43e..98fced1 100644
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -1,38 +1,55 @@
-
-
-Multiple Sequence Alignment Web Service
-
-
-Multiple Sequence Alignment Web Services
-
-Multiple sequence alignment services are accessed from the Web
-Service→Alignment menu. When an entry from this menu is
-selected, either the currently selected residues, or the whole
-sequence set (if there is no selection or only one sequence is
-selected) will be submitted for multiple sequence alignment.
-
-There are two kinds of multiple sequence alignment operations
-available:
-- alignment - where a new alignment is constructed from the input
-
-- realignment -
-where any existing alignments in the input are passed to the service
-for profile based alignment.
-
-
-
-
-Multiple Alignments of Sequences with hidden columns
-Multiple alignment services are 'column separable' analysis
-operations. If the input contains hidden columns then each
-visible segment of the input sequence set will be submitted for
-alignment separately, and the results concatenated (with the hidden
-regions preserved) once all alignment functions have completed. Each
-sub-job's state is reported in its own tab:
-
Multiple Multiple Sequence Alignment sub jobs running at
-once
-
-
-
-
+
+
+
+Multiple Sequence Alignment Web Service
+
+
+Multiple Sequence Alignment Web Services
+
+Multiple sequence alignment services are accessed from the Web
+Service→Alignment menu. When an entry from this menu is
+selected, either the currently selected residues, or the whole
+sequence set (if there is no selection or only one sequence is
+selected) will be submitted for multiple sequence alignment.
+
+There are two kinds of multiple sequence alignment operations
+available:
+- alignment - where a new alignment is constructed from the input
+
+- realignment -
+where any existing alignments in the input are passed to the service
+for profile based alignment.
+
+
+
+
+Multiple Alignments of Sequences with hidden columns
+Multiple alignment services are 'column separable' analysis
+operations. If the input contains hidden columns then each
+visible segment of the input sequence set will be submitted for
+alignment separately, and the results concatenated (with the hidden
+regions preserved) once all alignment functions have completed. Each
+sub-job's state is reported in its own tab:
+
Multiple Multiple Sequence Alignment sub jobs running at
+once
+
+
+
+