X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=d627c66e09d132d4bc5ff0a1951215e4ccad4e6c;hb=6f9d7b98943ecba292a9c0dd65b30c4d8150c98f;hp=626603673a2191bcd8eff4a811d54e1fb1f26ab0;hpb=4f2b05136dc33eebe10e8b6a52b5f575273c6810;p=jalview.git

diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html
index 6266036..d627c66 100644
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -52,21 +52,18 @@
   </p>
   <p>
     <strong>Alignment programs supported by JABAWS</strong>. <br />Versions
-    shown are those bundled with JABAWS 2.01 - if you are using a
+    shown are those bundled with JABAWS 2.2 - if you are using a
     different server, check its home page to find out which versions are
     provided.
-  <ul>
-    <li><a href="http://www.clustal.org/">Clustal Omega and
-        Clustal W</a> (version 2.0.12)</li>
-    <li><a href="http://mafft.cbrc.jp/alignment/software/">Mafft</a>
-      (version 6.8.57b)</li>
-    <li><a href="http://www.drive5.com/muscle">Muscle</a> (version
-      3.8.31)</li>
-    <li><a
-      href="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-    >Tcoffee</a> (version 8.99)</li>
-    <li><a href="http://probcons.stanford.edu/">Probcons</a>
-      (version 1.12)</li>
+    <ul>
+      <li><a href="http://www.clustal.org/omega">Clustal Omega</a> (version 1.2.4)</li>
+      <li><a href="http://www.clustal.org/clustal2">ClustalW</a> (version 2.1)</li>
+      <li><a href="http://align.bmr.kyushu-u.ac.jp/mafft/software/">Mafft</a> (version 7.310)</li>
+      <li><a href="http://www.drive5.com/muscle">Muscle</a> (version 3.8.31)</li>
+      <li><a href="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html">T-coffee</a> (version 11.00.8cbe486)</li>
+      <li><a href="http://probcons.stanford.edu/">Probcons</a> (version 1.12)</li>
+      <li><a href="http://msaprobs.sourceforge.net/">MSAProbs</a> (version 0.9.7)</li>
+      <li><a href="http://sourceforge.net/projects/glprobs/">GLProbs</a> (version 0.9.7)</li>
   </ul>
   </p>
 
@@ -74,12 +71,11 @@
     <strong>Multiple Alignments of Sequences with hidden
       columns</strong><br> Multiple alignment services are 'column
     separable' analysis operations. If the input contains <a
-      href="../features/hiddenRegions.html"
-    >hidden columns</a> then each visible segment of the input sequence
-    set will be submitted for alignment separately, and the results
-    concatenated (with the hidden regions preserved) once all alignment
-    functions have completed. Each sub-job's state is reported in its
-    own tab:
+      href="../features/hiddenRegions.html">hidden columns</a> then
+    each visible segment of the input sequence set will be submitted for
+    alignment separately, and the results concatenated (with the hidden
+    regions preserved) once all alignment functions have completed. Each
+    sub-job's state is reported in its own tab:
   <p>
   <center>
     <strong>Multiple Multiple Sequence Alignment sub jobs