X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2Fmsaclient.html;h=d627c66e09d132d4bc5ff0a1951215e4ccad4e6c;hb=8406f2ced29d2c04dbabaf1cde80b1a7fa8ce8ce;hp=b68557677a3e1d0a1fd004a51a04b0e9741a2f4d;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html
index b685576..d627c66 100644
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -39,34 +39,31 @@
from the input
realignment - where any aligned sequences will be
used by the service to construct a profile based alignment of the
- remaining unaligned sequences.
+ remaining unaligned sequences
JABAWS Alignment services
Most alignment services are provided by the
JABAWS framework, which allows you to
customise the precise parameters used when running each alignment
- prgoram. In addition to the 'Default settings', you may choose from a
+ program. In addition to the 'Default settings', you may choose from a
range of alignment preset settings, or create your own using the
'Edit Settings And Run ..' dialog
box.
Alignment programs supported by JABAWS.
Versions
- shown are those bundled with JABAWS 2.01 - if you are using a
+ shown are those bundled with JABAWS 2.2 - if you are using a
different server, check its home page to find out which versions are
provided.
-
- - Clustal Omega and
- Clustal W (version 2.0.12)
- - Mafft
- (version 6.8.57b)
- - Muscle (version
- 3.8.31)
- - Tcoffee (version 8.99)
- - Probcons
- (version 1.12)
+
@@ -74,12 +71,11 @@
Multiple Alignments of Sequences with hidden
columns
Multiple alignment services are 'column
separable' analysis operations. If the input contains hidden columns then each visible segment of the input sequence
- set will be submitted for alignment separately, and the results
- concatenated (with the hidden regions preserved) once all alignment
- functions have completed. Each sub-job's state is reported in its
- own tab:
+ href="../features/hiddenRegions.html">hidden columns then
+ each visible segment of the input sequence set will be submitted for
+ alignment separately, and the results concatenated (with the hidden
+ regions preserved) once all alignment functions have completed. Each
+ sub-job's state is reported in its own tab:
Multiple Multiple Sequence Alignment sub jobs