X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2FwebServicesParams.html;h=84eccc3298cb47582695ed261511e8f6392ec5c4;hb=f2450b343be28d1b46f71a809d3d85041bf5aa62;hp=fd0acf6aa57a5d4b66be909cee16bb82d57d80ec;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git
diff --git a/help/html/webServices/webServicesParams.html b/help/html/webServices/webServicesParams.html
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--- a/help/html/webServices/webServicesParams.html
+++ b/help/html/webServices/webServicesParams.html
@@ -1,86 +1,102 @@
-
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
Web service Job Parameter Dialog box
++ Web service Job Parameter Dialog box +
+ ++ Some Jalview services, including those provided by JABAWS, support a range of parameters + and options, enabling you to employ the most appropriate settings + for the input data. In addition to any preset combinations provided + by services themselves, the Web services parameters dialog box also + allows you to create and store your own parameter sets, so they can + be accessed quickly from the presets menu. +
+
+ Accessing the parameter dialog box
The
+ parameters dialog box is opened by selecting the 'Edit and Run' menu
+ entries within the JABAWS analysis submenu of the alignment window's
+ web services menu. Once opened, it presents the parameters and
+ options available for the chosen analysis for you to modify, and and
+ also enables you to browse any available service presets and select,
+ create or modify your own user defined parameter sets. Once you are
+ satisfied with the analysis parameters, press the Start
+ Job button to initiate the analysis.
+
+ Getting help on the analysis parameters
+ Each option or parameter shown in the dialog is accompanied by a
+ brief description, which is shown as a tooltip when the mouse is
+ moved over it. For some, a link symbol will also be shown (as in the
+ example below), indicating that further information is available
+ online. In this case, right-clicking (or command-click) will open a
+ pop-up menu allowing you to select a URL to open in your web
+ browser.
+
+
The menu and text box at the top of the dialog box displays the + name of the current parameter set. The name can be edited, should + you wish to change or create a new user defined set, or clicked to + present a menu enabling other sets to be browsed. The description + shown below may also be edited (and the box resized to facilitate + this), allowing you to provide notes to accompany the parameter set. + The modification of these or any of the option or parameter settings + will enable one or more of the following buttons, that allow you to: -
Some Jalview services including those provided by JABAWS, support a range of parameters and -options, enabling you to employ the most appropriate settings for the -input data. In addition to any preset combinations provided by the -services themselves, the Web services parameters dialog box also allows -you to create and store your own parameter sets, so they can be accessed -quickly from the presets menu.
-Accessing the parameter dialog box
-The parameters dialog box is opened by selecting the 'Edit and Run' menu
-entries within the JABAWS analysis submenu of the alignment window's web
-services menu. Once opened, it presents the parameters and options
-available for the chosen analysis for you to modify, and and also
-enables you to browse any available service presets and select, create
-or modify your own user defined parameter sets. Once you are satisfied
-with the analysis parameters, press the Start Job
-button to initiate the analysis.
Getting help on the analysis parameters
-Each option or parameter shown in the dialog is accompanied by a brief
-description, which is shown as a tooltip when the mouse is moved over
-it. For some, a link symbol will also be shown (as in the example
-below), indicating that further information is available online. In this
-case, right-clicking (or command-click) will open a pop-up menu allowing
-you to select a URL to open in your web browser.
-
The menu and text box at the top of the dialog box displays the -name of the current parameter set. The name can be edited, should you -wish to change or create a new user defined set, or clicked to present a -menu enabling other sets to be browsed. The description shown below may -also be edited (and the box resized to facilitate this), allowing you to -provide notes to accompany the parameter set. The modification of these -or any of the option or parameter settings will enable one or more of -the following buttons, that allow you to: -
Support for adjusting and saving web service parameter -sets was added in Jalview 2.6
+ ++ Support for adjusting and saving web service parameter sets + was added in Jalview 2.6 +