X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwebServices%2FwebServicesPrefs.html;fp=help%2Fhtml%2FwebServices%2FwebServicesPrefs.html;h=0000000000000000000000000000000000000000;hb=44d68d55d9c85bf7b28853feeebc4b901c4a8392;hp=0ebeea534691c7901a483f353aca2f73926425a7;hpb=6f9d7b98943ecba292a9c0dd65b30c4d8150c98f;p=jalview.git diff --git a/help/html/webServices/webServicesPrefs.html b/help/html/webServices/webServicesPrefs.html deleted file mode 100644 index 0ebeea5..0000000 --- a/help/html/webServices/webServicesPrefs.html +++ /dev/null @@ -1,105 +0,0 @@ - - - -The Web Services Preferences Dialog Box - - -

- The Web Services Preferences Dialog Box -

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- Jalview includes a range of web services clients for data retrieval - and analysis. The Web Services menu found in each alignment - window provides access to some of these services, and is configured - via the web services preference dialog box, available from - the Preferences panel from the Tools→Preferences... - menu from the Jalview Desktop window's menu bar. -

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- Web Services Preferences Panel
- Web Services Preference Panel -
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- Configuring the list of JABAWS servers
The - main area of the panel shows the list of JABAWS - servers that Jalview is currently aware of. The list includes a - colour coded status: green indicates that all services are available - for a given server, amber signifies that one or more services on the - server are not fully functional, and red highlights servers that - could not be contacted or are not functional for some other reason. -

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- A server's URL may be added, edited by double clicking on it, or - deleted by selecting it and using the buttons below. After adding or - editing a server's URL, you will be asked if you wish to test the - server. If you wish to do so, then first ensure you can view the new - server's test report, which will be output on Jalview's standard - console output (you can open Jalview's built in console viewer via - the Tools→Java Console menu option). -

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- Controlling the layout of the Web Services Menu
- The range of services that Jalview is able to access depends upon - your requirements, and local computational resources. However, when - a large number of resources are available, then the entries and sub - menus in the web services menu can quickly become - unwieldly. The options in the lower part of the dialog box enable - you to control the display of each type of analysis service client - in the web services menu. In addition, indexing options are provided - that enable you to define the layout of the menus provided for - JABAWS services by sorting them into submenus according to analysis - type and/or host server. -

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- The web services preferences panel was added in Jalview - 2.6, and server status indications added in Jalview 2.8. -

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- Web Services Invalid URL - warnings
Jalview may inform you of any problems - contacting the web services by showing a dialog box like the one - below:
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- Web Services Invalid URL Warning dialog box
Web Services Invalid URL Warning - dialog box -
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- Note: this warning will be shown if you are - running the Jalview desktop without any network connection, or if you - have configured - JABA services which cannot be accessed from - your location. Should you wish to disable these warnings, then uncheck - the - Display warnings check box in the web services preferences. -

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- The web services warnings dialog box was added in Jalview - 2.6.1 -

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