X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=0abd2a7b9501e9f1fffc3bc4456f39ec4af1d50a;hb=06fb1b18865c75aa78186970e74392058444fde4;hp=e8b9c968e681dfb9370e5db239c6bd73833930d8;hpb=947ae75e0aab2336bfead4d4f303d028d0eb58ca;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index e8b9c96..0abd2a7 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -24,38 +24,27 @@
- What's new in Jalview 2.10.1 ?
+ What's new in Jalview 2.10.4 ?
- Jalview 2.10.1 was released on 24th November 2016. Full details are
- in the Jalview 2.10.1
- Release Notes, but the highlights are below. This is also the
- first release to include contributions from Kira Mourão, who
- joined Jalview's core development team in October 2016.
+ This is the May 2018 release of Jalview, and the last in the 2.10.x series. Jalview 2.10.4 includes:
- - More memory efficient
We've slimmed
- down the consensus analysis data structures used by Jalview so
- even wider alignments can be worked with.
- - Select highlighted region
Press 'B'
- or use the new menu option in the alignment window's Select menu
- to mark columns containing highlighted regions generated from
- structure selections, mouse-overs, or resulting from a
- Find operation.
- - New custom link mechanism for opening URLs
- for database cross references.
If you have customised URL
- links in your Jalview preferences, then you may already have seen
- the Update your links
- warning dialog.
- - New command line export option for BioJS
- MSAviewer
A number of small bugs with the HTML export
- functions from the Jalview desktop were also fixed.
- - Small but significant changes to the
- physicochemical properties and consensus calculations
Threonine
- is no longer considered a non-hydrophobic residue in the protein
- conservation calculation, and minor bugs addressed in PID and
- consensus colouring.
+ - Numerous efficiency improvements in the renderer and overview when working with large alignments with lots of hidden columns
+ - Use of HTTPS when connecting to Uniprot, Ensembl and other EBI web services
+ - Critical patches for running Jalview on OSX with Java 10
+ - Easier adjustment of the Alignment ID panel and Annotation panel
+ - Improved support for mapping between 3D Structures and Uniprot Protein Sequences
+ - Improved support for discovering CDS and transcripts for Proteins and Ensembl gene IDs
+ - New buttons on the Structure Chooser for adding structures
+ to an existing view, and disabling automatic superposition
+ according to linked alignments
+ - Annotation transfer between Chimera and Jalview (formerly only
+ available in 'Experimental' mode)
-
+
+ The full list of bugs fixed in this release can be found in the 2.10.4
+ Release Notes.
+