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- What's new in Jalview 2.10.3b1 ?
-
-
- This release - Jalview 2.10.3b1 is the January 2018 patch release for Version 2.10.3 was released in November 2017. The major focus was to
- improve Jalview's sequence features datamodel and the scalability of
- the alignment rendering system. The bugs fixed in this release can be found in the 2.10.3b1
- Release Notes.
-
- The highlights for Jalview 2.10.3 include:
+ What's new in Jalview 2.10.5 ?
+ Jalview 2.10.5 is a minor release that includes critical
+ patches for users working with Ensembl, RNA secondary structure
+ annotation, and those running Jalview on OSX with Java 10.
- - Faster and more responsive UI when importing and working
- with wide alignments and handling hundreds and thousands of
- sequence features
- - Improved usability with PDB and UniProt Free Text
- Search dialog, and new tab for retrieval of sequences for lists of
- IDs.
+
- Jalview's default memory limit increased to 1G.
If you have
+ problems starting Jalview 2.10.5 and you have 1G or less
+ physical memory on your machine, you will need to reduce the memory allocated to
+ Jalview.
+
+ - EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.
+ - Ensembl Client updated for Ensembl Rest API v7.
The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.
- - Short names assigned to sequences retrieved from UniProt
- - Groovy console upgraded to 2.4.12 (improved support for Java 9)
+ - Improved support for VIENNA extended dot-bracket notation
+ for RNA secondary structure.
+ - Positional and selected region highlighting in VARNA
+ 'trimmed sequence' view made more reliable.
- Experimental Features
+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The
+ majority of bug fixes and improvements in 2.10.5 are due to Jalview users
+ contacting us via the jalview-discuss email list. Thanks to everyone
+ who took the time to help make Jalview better !
- Remember, please enable the Experimental Features option in
- the Jalview Desktop's Tools menu, and then restart Jalview
- if you want to try out features below:
+ Jalview and Java 10
+ This release addresses a critical bug for OSX users who are
+ running Jalview with Java 10 which can prevent files being saved
+ correctly through the 'Save As' dialog box.
+ Known Issues
- - Annotation transfer between Chimera and Jalview
Two
- new entries in
- the Chimera viewer's Chimera menu allow positional annotation to
- be exchanged between Chimera and Jalview.
+ - OSX: The 'Open File' dialog for Jalview's Groovy Console
+ appears with the title 'Save As', and attempting to select a file to load yields a FileNotFound exception.The workaround is to first clear the 'Untitled' filename before selecting the file you wish to load.
+
+ - OSX: Links don't open when clicked on or via the Sequence or Alignment window popup menu.
+ - OSX (Webstart): Jalview only displays old news feed items
-