X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=13fe656793c44b226851761ef5bed6d16a8ca710;hb=760646090b2a9c46e3e9a972f18f827452e48826;hp=6901f61751da2ebf4eaa35e52055da82533c1ffb;hpb=11ca0240a5792724d5e890de9fbd63cb2f11093a;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 6901f61..13fe656 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -24,40 +24,50 @@

- What's new in Jalview 2.10.3 ? -

- Version 2.10.3 was released in November 2017. The full list of - bug fixes and new features can be found in the 2.10.3 Release Notes, but - the highlights are below. + What's new in Jalview 2.10.5 ?

Jalview 2.10.5 is a minor release that includes critical + patches for users working with Ensembl, RNA secondary structure + annotation, and those running Jalview on OSX with Java 10.

Faster and more responsive UI when importing and working - with wide alignments and handling hundreds and thousands of - sequence features
Improved usability with PDB and UniProt Free Text - Search dialog, and new tab for retrieval of sequences for lists of - IDs. +
Jalview's default memory limit increased to 1G.
If you have + problems starting Jalview 2.10.5 and you have 1G or less + physical memory on your machine, you will need to reduce the memory allocated to + Jalview. +
EPS, PNG and SVG export now includes hidden sequence + markers, and representative sequences are marked in bold.
Ensembl Client updated for Ensembl Rest API v7.
The + latest Ensembl API is not backwards compatible with earlier + versions of Jalview, so if you require Ensembl functionality you + will need to install this release.
Short names assigned to sequences retrieved from UniProt
Improved support for VIENNA extended dot-bracket notation + for RNA secondary structure.
Positional and selected region highlighting in VARNA + 'trimmed sequence' view made more reliable.

- Experimental Features + The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The + majority of bug fixes and improvements in 2.10.5 are due to Jalview users + contacting us via the jalview-discuss email list. Thanks to everyone + who took the time to help make Jalview better !

- Remember, please enable the Experimental Features option in - the Jalview Desktop's Tools menu, and then restart Jalview - if you want to try out features below: + Jalview and Java 10

This release addresses a critical bug for OSX users who are + running Jalview with Java 10 which can prevent files being saved + correctly through the 'Save As' dialog box.

+ Known Issues

Annotation transfer between Chimera and Jalview
Two - new entries in - the Chimera viewer's Chimera menu allow positional annotation to - be exchanged between Chimera and Jalview.
OSX: The 'Open File' dialog for Jalview's Groovy Console + appears with the title 'Save As', and attempting to select a file to load yields a FileNotFound exception.
The workaround is to first clear the 'Untitled' filename before selecting the file you wish to load. +
OSX: Links don't open when clicked on or via the Sequence or Alignment window popup menu.
OSX (Webstart): JalviewÂ only displays old news feed items