X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=13fe656793c44b226851761ef5bed6d16a8ca710;hb=cf64def09a8b741483854ddd8c034d0aefff15b4;hp=f5fcf1876855f01842448f83983db931d4438347;hpb=5164bb36c53473e8cf6824cc8ac26e29e63cff42;p=jalview.git
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- What's new in Jalview 2.10.2 ?
-
-
- Full details about Jalview 2.10.2 are in the Release Notes, but the
- highlights are below.
+ What's new in Jalview 2.10.5 ?
+ Jalview 2.10.5 is a minor release that includes critical
+ patches for users working with Ensembl, RNA secondary structure
+ annotation, and those running Jalview on OSX with Java 10.
- -
-
- New preferences for opening
- web pages for database cross-references via the UK Elixir's
- EMBL-EBI's MIRIAM database and identifiers.org services.
+
- Jalview's default memory limit increased to 1G.
If you have
+ problems starting Jalview 2.10.5 and you have 1G or less
+ physical memory on your machine, you will need to reduce the memory allocated to
+ Jalview.
+ - EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.
+ - Ensembl Client updated for Ensembl Rest API v7.
The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.
+
+ - Improved support for VIENNA extended dot-bracket notation
+ for RNA secondary structure.
+ - Positional and selected region highlighting in VARNA
+ 'trimmed sequence' view made more reliable.
- Experimental Features
+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The
+ majority of bug fixes and improvements in 2.10.5 are due to Jalview users
+ contacting us via the jalview-discuss email list. Thanks to everyone
+ who took the time to help make Jalview better !
- This release of Jalview includes a new option in the Jalview Desktop
- that allows you to try out features that are still in development. To
- access the features described below, please first enable the
- Tools→Enable Experimental Features option, and then restart Jalview.
+
+ Jalview and Java 10
+ This release addresses a critical bug for OSX users who are
+ running Jalview with Java 10 which can prevent files being saved
+ correctly through the 'Save As' dialog box.
+ Known Issues
- - Annotation transfer between Chimera and Jalview
Two
- new entries in the Chimera viewer's Chimera menu allow positional
- annotation to be exchanged between Chimera and Jalview.
+ - OSX: The 'Open File' dialog for Jalview's Groovy Console
+ appears with the title 'Save As', and attempting to select a file to load yields a FileNotFound exception.The workaround is to first clear the 'Untitled' filename before selecting the file you wish to load.
+ - OSX: Links don't open when clicked on or via the Sequence or Alignment window popup menu.
+ - OSX (Webstart): Jalview only displays old news feed items