X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=20c80df241d671893665c269b36385dcd4e9b45f;hb=a16c37a5983e3c581dc3d3030e1439e8fb3239f1;hp=88e8ee9114fe5b7fe723e4d17d314de97798dbfa;hpb=c78133920a45e1b5b0b1bea5807f3ae880425914;p=jalview.git

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 88e8ee9..20c80df 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -24,80 +24,35 @@
 		<strong>What's new ?</strong>
 	</p>
 	<p>
-		The Jalview 2.7 release features new web services, and important
-		improvements to the way in which Jalview handles alignments and
-		associated PDB structures, as well as numerous minor improvements and
-		bug fixes. Version 2.7 of the JalviewLite applet also features a
-		significantly enhanced Javascript API enabling it to be more easily
-		integrated with javascript based web applications. <br /> For full
-		details see the <a href="releases.html#Jalview2.7">Jalview 2.7
+		The Jalview 2.7.1 release features (tbc)
+		<br /> For full
+		details see the <a href="releases.html#Jalview2.7.1">Jalview 2.7.1
 			release history</a>.
 	</p>
 	<p>
-		<strong>Highlights in Jalview Desktop Version 2.7</strong>
+		<strong>Highlights in Jalview Desktop Version 2.7.1</strong>
 	</p>
 	<ul>
-		<li>New <a href="features/viewingpdbs.html">structure viewer
-				options</a>:
-			<ul>
-				<li>Colour and superimpose 3D structures of complexes and
-					multi-domain chains using several different alignments</li>
-				<li>Drag and drop to associate PDB files with sequences that
-					have the same name</li>
-				<li>Open and superimpose all associated structures for the
-					current selection</li>
-			</ul>
-		<li>New web services for <a href="webServices/shmr.html">alignment
-				analysis</a></li>
-		<li>Improved graphical user interface for <a
-			href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>services.
-		</li>
-		<li>Sort associated alignment views option in tree viewer</li>
-		<li>Default colours for <a
-			href="colourSchemes/annotationColouring.html">shading alignment
-				by quantitative annotation</a>.
-		</li>
-		<li><a href="webServices/newsreader.html">Jalview Desktop RSS
-				reader</a> - following important updates at <a
-			href="http://www.jalview.org/feeds/desktop/rss">http://www.jalview.org/feeds/desktop/rss</a>
+
+	<li>New Purine/Pyrimidine colour scheme</li>
+	<li>Colouring of RNA secondary structure by helices.  See <a href="na/index.html">Nucleic Acid Support</a></li>
+	<li>Embedded <a href="http://www.varna.fr/">VARNA</a> RNA secondary structure viewer.
 	</ul>
 
 	<p>
 		<strong>Issues Resolved (a select list - see the <a
-			href="releases.html#Jalview2.7">release history</a> for full details)
+			href="releases.html#Jalview2.7.1">release history</a> for full details)
 		</strong>
 	</p>
 	<p>
 		<strong>Issues in the Jalview Desktop</strong>
 	<ul>
-		<li>Problems viewing associated structures for sequences
-			retrieved from UNIPROT</li>
-		<li>Problems viewing Jalview projects from older versions in
-			version 2.6</li>
-		<li>Preservation of hidden annotation rows and tree bootstrap
-			values in projects</li>
-		<li>Newly added JABAWS servers not always visible in web services
-			menu</li>
 	</ul>
 	<strong>Issues specific to the JalviewLite Applet</strong>
 	<ul>
-		<li>Layout problems when lots of annotation rows are displayed</li>
-		<li>&lt;= shown as = in annotation row tooltip</li>
-		<li>export features raises exception when no features exist</li>
-		<li>relative URLs not handled properly when used in parameters
-			and annotation files</li>
 	</ul>
 	<strong>Issues affecting both applet and application</strong>
 	<ul>
-		<li>sequence numbering not preserved in MSF alignment output</li>
-		<li>sequence associated secondary structure not correctly parsed
-			in interleaved stockholm</li>
-		<li>sequences containing lowercase letters are not properly
-			associated with their pdb files</li>
-		<li>Jalview PDB file reader does not extract sequence from deoxy
-			nucleotide chains correctly</li>
-		<li>Sequence length given in alignment properties window is off
-			by 1</li>
 	</ul>
 </body>
 </html>
