X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=22db13fb7ccc8363f6ee26c105d24bab07d02e5e;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=75afae872444fa133618b222e0fdd898faa8f6ab;hpb=dc6f1dbbd2c3e951c94f969703d595ea22e33f73;p=jalview.git
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-
-
-What's new ?
-
-
-What's new ?
-
-Jalview Version 2.3
-Jmol 11.0.2 integration
- PDB views stored in Jalview XML files
-Slide sequences
-Edit sequence in place
-EMBL CDS features
-DAS Feature mapping
-Feature ordering
-Alignment Properties
-Annotation Scores
-Sort by scores
-Feature/annotation editing in applet
-
-
-Issues Resolved
-
- Headless state operation in 2.2.1
- Incorrect and unstable DNA pairwise alignment
- Cut and paste of sequences with annotation
- Feature group display state in XML
- Feature ordering in XML
- 2.2.1 applet had no feature transparency
- Number pad keys can be used in cursor mode
- Structure Viewer mirror image resolved
-
-See the Release History page for
-details of all new features and resolved issues.
-
-
+
+
+
+What's new ?
+
+
+What's new ?
+Jalview 2.6 introduces new web services, and includes an updated
+version of the Jmol molecular graphics visualization system. See the release history for the full
+details.
+Highlights in Jalview Version 2.6
+
+ - JABA Web Services for
+ multiple alignment using:
+
+ - ClustalW
+ - MAFFT
+ - Muscle
+ - ProbCons
+ - T-COFFEE
+
+
+ - User modifiable alignment service parameters
+ - Visualization of superposed structures associated with protein
+ or nucleotide sequence alignments.
+ - Export coordinates and projection as CSV from PCA viewer
+
+
+Issues Resolved (a select list - see release history for details)
+
+ - clustalx colourscheme colours Ds preferentially when both D+E
+ are present in over 50% of the column
+ - Prevent sequence fetcher from replacing ',' for ';' when querying DAS sequence sources
+ - InstallAnywhere builds fail to launch on OS X java 10.5 update
+ 4 (due to apple Java 1.6 update)
+
+See the Release History page for
+details of all new features and resolved issues.
+
+