X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=22db13fb7ccc8363f6ee26c105d24bab07d02e5e;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=dc956a97fb188bc7cbcd1bd5225fd89eefb80a81;hpb=1ccaed89cec493136eb0f5ac22f2942dd8ce9bb0;p=jalview.git
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-
-What's new
-
-What's new
-If you can read this then you'll already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
-
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment will create a "selection region"
- which may be full sequences or groups of residues.
- - To edit a sequence, the "Shift" key must be held down
- - To edit groups, either the "Alt" key or the "Control"
- key must be held down.
- - Colours maybe applied to the background, ie the whole alignment, or to selected
- regions. If the tickbox "Apply colour to all groups" is ticked (this
- is the default), then the colour will be applied to all groups.
- - Use the right mouse button (apple and click on the mac) to define a selected
- region on the alignment as a new group.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone! (and redone)
-
-
-
+
+
+
+What's new ?
+
+
+What's new ?
+Jalview 2.6 introduces new web services, and includes an updated
+version of the Jmol molecular graphics visualization system. See the release history for the full
+details.
+Highlights in Jalview Version 2.6
+
+ - JABA Web Services for
+ multiple alignment using:
+
+ - ClustalW
+ - MAFFT
+ - Muscle
+ - ProbCons
+ - T-COFFEE
+
+
+ - User modifiable alignment service parameters
+ - Visualization of superposed structures associated with protein
+ or nucleotide sequence alignments.
+ - Export coordinates and projection as CSV from PCA viewer
+
+
+Issues Resolved (a select list - see release history for details)
+
+ - clustalx colourscheme colours Ds preferentially when both D+E
+ are present in over 50% of the column
+ - Prevent sequence fetcher from replacing ',' for ';' when querying DAS sequence sources
+ - InstallAnywhere builds fail to launch on OS X java 10.5 update
+ 4 (due to apple Java 1.6 update)
+
+See the Release History page for
+details of all new features and resolved issues.
+
+