X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=22db13fb7ccc8363f6ee26c105d24bab07d02e5e;hb=918faab51fdcb2ff14958e5ca46ba75b73d17991;hp=8484a26b4f948819e798208c8b3362c554463b12;hpb=f37dc08487781352739364a3977a43e9fa4d9176;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 8484a26..248db1a 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,37 +1,76 @@
+
What's new ?
-What's new ?
-
-Jalview Version 2.3
-Jmol 11 integration
-PDB views in Jalview XML
-Slide sequences
-Edit sequence in place
-EMBL CDS features
-DAS Feature mapping
-Feature ordering
-Alignment Properties
-Annotation Scores
-Sort by scores
-Feature/annotation editing in applet
-
-
-Issues Resolved
-
-Headless state operation in 2.2.1
-
Incorrect and unstable DNA pairwise alignment
-
-Cut and paste of sequences with annotation
-
-Feature group display state in XML
-Feature ordering in XML
-2.2.1 applet had no feature transparency
-
-
-See the Release History page for
-details of all new features and resolved issues.
+
+ What's new in Jalview 2.10.5 ?
+
+ Jalview 2.10.5 is a minor release that includes critical
+ patches for users working with Ensembl, and RNA secondary structure
+ annotation.
+
+ - Jalview's default memory limit increased to 1G. If you have
+ problems starting Jalview 2.10.5 and you have 1G or less
+ physical memory on your machine, you will need to reduce the memory allocated to
+ Jalview.
+
+ - EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.
+ - Ensembl Client updated for Ensembl Rest API v7.
The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.
+
+ - Improved support for VIENNA extended dot-bracket notation
+ for RNA secondary structure
+ - Positional and selected region highlighting in VARNA
+ 'trimmed sequence' view now more reliable
+
+
+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The
+ majority of improvement in 2.10.5 are due to Jalview users
+ contacting us via the jalview-discuss email list. Thanks to everyone
+ who took the time to do this !
+
+
+ Jalview and Java 10
+
+ This release addresses a critical bug for OSX users who are
+ running Jalview with Java 10 which can prevent files being saved
+ correctly through the 'Save As' dialog box.
+ Known Issues
+
+ - OSX: The 'Save As' dialog for Jalview's Groovy Console
+ remains affected: the workaround is to create a new file outside
+ of Jalview and then select it when saving your groovy script. We
+ hope to address this in the next major release.
+ - OSX: Jalview only displays old news feed items
+ - OSX: Users may have to manually configure a web browser
+ helper application ('/usr/bin/open' can be used in the Connections
+ Preferences panel to open URLs with your default browser).
+