X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=44e0961a467d04cfdea0d0d37f106bffc1fe695f;hb=6f32b630c64f46bc3157f4ec748ef05b985df5bb;hp=965edea3f8725be155776a0a09a739e9704d5d27;hpb=92ae1457a784553ccdb842b122d481ce6c5ff24f;p=jalview.git
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-What's new ?
+
+
+What's new ?
+
-What's new ?
-If you are reading this then you will already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
+What's new ?
+The Jalview 2.6.1 release fixes a number of minor bugs affecting
+Jalview operation, including issues affecting the import and export of
+PIR files and working with multiple multiple structure superpositions.
+For full details see the Jalview
+2.6.1 release history.
+Highlights in Jalview Version 2.6
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment creates a "selection region"
- which may be full sequences or groups of residues.
- - To insert or edit the gaps in one sequence in alignment, the
- "Shift" key must be held down when dragging the mouse.
- - To insert or edit gaps for a group of sequences, the
- "Alt" key (or in X windows the "Control"
- key) must be held down.
- - Selecting colour schemes in the colour menu either sets just the
- "background" colourscheme for the alignment, or - when
- the tickbox "Apply colour to all groups" is ticked,
- applies the scheme to the background and all groups defined on the alignment.
- - Use the right mouse button (apple and click on the Mac) whilst
- the pointer is within the selection area to access the "define" region menu to
- define a new region, give it a name, and change its colourscheme and display
- properties.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone, and redone!
+ - JABA Web Services for
+ multiple alignment using:
+
+ - ClustalW
+ - MAFFT
+ - Muscle
+ - ProbCons
+ - T-COFFEE
+
+
+ - User modifiable alignment service parameters
+ - Visualization of superposed structures associated with protein
+ or nucleotide sequence alignments.
+ - Export coordinates and projection as CSV from PCA viewer
+
+Issues Resolved (a select list - see release
+history for details)
+
+See the Release History page for
+details of all new features and resolved issues.