X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=47819f288c31734c80e49f25d2497c9a848ca9f4;hb=8f9c8b3f924e1f320bbdfd5e16d06a21c09cb986;hp=3af69ae87bc785d2c6d10ed3974ef4c09eb807ef;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git
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-
+What's new ?
-Whats new
-If you can read this then you'll already have seen some of the recent changes
+
What's new ?
+If you are reading this then you will already have seen some of the recent changes
made to Jalview.
-
+ Jalview takes advantage of some of the more recent user interface developments
+ in the Java programming language. For instance Jalview is now a multi windowed
+ application, this keeps all your Jalview windows neatly together in one main
+ application window.
+If you were familiar with the original Jalview, here is a list of important
+ features you should know about the current development:
+
+ - Editing sequences is no longer the default when mouse clicking the alignment.
+ Instead, mouse clicking on the alignment creates a "selection region"
+ which may be full sequences or groups of residues.
+ - To insert or edit the gaps in one sequence in alignment, the "Shift"
+ key must be held down when dragging the mouse.
+ - To insert or edit gaps for a group of sequences, the "Alt" key
+ (or in X windows the "Control" key) must be held down.
+ - Selecting colour schemes in the colour menu either sets just the "background"
+ colourscheme for the alignment, or - when the tickbox "Apply colour to
+ all groups" is ticked, applies the scheme to the background and all groups
+ defined on the alignment.
+ - Use the right mouse button (apple and click on the Mac) whilst the pointer
+ is within the selection area to access the "define" region menu
+ to define a new region, give it a name, and change its colourscheme and display
+ properties.
+ - Conservation is automatically updated whenever the alignment is edited
+ - There is no "quick draw" option
+ - Edits can be undone, and redone!
+
+
+
+ Release |
+ New Features |
+ Issues Resolved |
+
+
+ 2.05
+ 30/8/05 |
+
+ - Edit and annotate in "Wrapped" view
+ |
+
+ - Several GUI bugs resolved
+ |
+
+
+ 2.04
+ 24/8/05 |
+
+ - Hold down mouse wheel & scroll to change font size
+ |
+
+ - Improved JPred client reliability
+ - Improved loading of Jalview files
+ |
+
+
+ | 2.03
+ 18/8/05 |
+
+ - Set Proxy server name and port in preferences
+ - Multiple URL links from sequence ids
+ - User Defined Colours can have a scheme name and added to Colour Menu
+ - Choose to ignore gaps in consensus calculation
+ - Unix users can set default web browser
+ - Runs without GUI for batch processing
+ - Dynamically generated Web Service Menus
+ |
+
+ - InstallAnywhere download for Sparc Solaris
+ |
+
+
+ | 2.02
+ 18/7/05 |
+ |
+
+ - Copy & Paste order of sequences maintains alignment order.
+ |
+
+
+ 2.01
+ 12/7/05 |
+
+ - Use delete key for deleting selection.
+ - Use Mouse wheel to scroll sequences.
+ - Help file updated to describe how to add alignment annotations.
+ - Version and build date written to build properties file.
+ - InstallAnywhere installation will check for updates at launch of Jalview.
+ |
+
+ - Delete gaps bug fixed.
+ - FileChooser sorts columns.
+ - Can remove groups one by one.
+ - Filechooser icons installed.
+ - Finder ignores return character when searching. Return key will initiate
+ a search.
+
+ |
+
+
+ | 2.0
+ 20/6/05 |
+ |
+ |
+
+
+