X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4b821794e06755ef60c7a2421b4b3faee15327d3;hb=4a9a2fc8a1b1a66b21e66429083f27a6fc8541b9;hp=407eca3989c41e0c03f50c8b58bdaaa5d8e8d502;hpb=1b9c3c2c4051fa3e39091ed9b5203c44482cd80e;p=jalview.git
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- What's new ?
+ What's new in Jalview 2.10.2 ?
- Jalview 2.10 is the next major release in the Jalview 2 series. Full
- details are in the Jalview
- 2.10 Release Notes, but the highlights are below.
+ Full details about Jalview 2.10.2 are in the Release Notes, but the
+ highlights are below.
+
+ - Update to JABAWS 2.2
Jalview's
+ alignment, protein conservation analysis, and protein disorder and
+ RNA secondary structure prediction services are now provided by JABAWS 2.2.
+ Several of the programs provided as services have been updated, so
+ their options and parameters have changed.
+ - New preferences for opening
+ web pages for database cross-references via the UK Elixir's
+ EMBL-EBI's MIRIAM database and identifiers.org services.
+
+ - Showing and hiding regions
+
+ - Hide
+ insertions in the PopUp menu has changed its behaviour.
+ Prior to 2.10.2, columns were only shown or hidden according
+ to gaps in the sequence under the popup menu. Now, only
+ columns that are gapped in all selected sequences as well as
+ the sequence under the popup menu are hidden, and column
+ visibility outside the selected region is left as is. This
+ makes it easy to filter insertions from the alignment view
+ (just select the region containing insertions to remove)
+ without affecting the rest of the hidden columns.
+
+
- Highlights in Jalview 2.10
+ Experimental Features
+
+
+ This release of Jalview includes a new option in the Jalview Desktop
+ that allows you to try out features that are still in development.
+ To access the features described below, please first enable the Tools→Enable
+ Experimental Features option, and then restart Jalview.
+
- - Ensembl sequence fetcher. Annotated Genes, transcripts and
- proteins can be retrieved via Jalview's new Ensembl REST client.
- - Improved sequence/structure mappings.
- Jalview now utilises the PDBe's SIFTS database (at EMBL-EBI) to
- match PDB data positions in UniProt sequences.
+ - Annotation transfer between Chimera and Jalview
Two
+ new entries in
+ the Chimera viewer's Chimera menu allow positional annotation to
+ be exchanged between Chimera and Jalview.
-