X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4b821794e06755ef60c7a2421b4b3faee15327d3;hb=91daa39be6c29713a821318497ff347a0569a52a;hp=3f402dc7dc0028fdc6b5aa125c522667c202fc11;hpb=dfabc2facf04bc805f0b6001b94de3c62b3049b0;p=jalview.git
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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
What's new ?
-What's new ?
-The Jalview 2.6.1 release fixes a number of minor bugs affecting
-Jalview operation, including issues affecting the import and export of
-PIR files and working with multiple multiple structure superpositions.
-For full details see the Jalview
-2.6.1 release history.
-Highlights in Jalview Version 2.6
-
- - JABA Web Services for
- multiple alignment using:
-
- - ClustalW
- - MAFFT
- - Muscle
- - ProbCons
- - T-COFFEE
-
-
- - User modifiable alignment service parameters
- - Visualization of superposed structures associated with protein
- or nucleotide sequence alignments.
- - Export coordinates and projection as CSV from PCA viewer
- - New Purine/Pyrimidine colour scheme
- - Colouring of RNA secondary structure by helices. See Nucleic Acid Support
-
-
-
-Issues Resolved (a select list - see release
-history for details)
-
-See the Release History page for
-details of all new features and resolved issues.
+
+ What's new in Jalview 2.10.2 ?
+
+
+ Full details about Jalview 2.10.2 are in the Release Notes, but the
+ highlights are below.
+
+
+ - Update to JABAWS 2.2
Jalview's
+ alignment, protein conservation analysis, and protein disorder and
+ RNA secondary structure prediction services are now provided by JABAWS 2.2.
+ Several of the programs provided as services have been updated, so
+ their options and parameters have changed.
+ - New preferences for opening
+ web pages for database cross-references via the UK Elixir's
+ EMBL-EBI's MIRIAM database and identifiers.org services.
+
+ - Showing and hiding regions
+
+ - Hide
+ insertions in the PopUp menu has changed its behaviour.
+ Prior to 2.10.2, columns were only shown or hidden according
+ to gaps in the sequence under the popup menu. Now, only
+ columns that are gapped in all selected sequences as well as
+ the sequence under the popup menu are hidden, and column
+ visibility outside the selected region is left as is. This
+ makes it easy to filter insertions from the alignment view
+ (just select the region containing insertions to remove)
+ without affecting the rest of the hidden columns.
+
+
+
+ Experimental Features
+
+
+ This release of Jalview includes a new option in the Jalview Desktop
+ that allows you to try out features that are still in development.
+ To access the features described below, please first enable the Tools→Enable
+ Experimental Features option, and then restart Jalview.
+
+