X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4b821794e06755ef60c7a2421b4b3faee15327d3;hb=e584930ae4941e8508c9073c6f08eb484a914bdf;hp=79cf7c98197d9c18e8884964fbeb4c5d7f93cc17;hpb=8a3915baf2a22618346a5a2ecd38f7fbca5d4a44;p=jalview.git
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What's new ?
-
- What's new ?
Jalview 2.8.0b1 is a bugfix
- release for Jalview version 2.8.
As usual you can find the
- highlights below, and the comprehensive list is given in the Jalview 2.8.0b1 Release Notes.
-
- This bug fix release includes numerous minor enhancements made over
- the last 12 months. Importantly, it is also the first release that
- provides Jalview as a trusted application, signed with a certificate
- donated to us by Certum.
+ What's new in Jalview 2.10.2 ?
- Enhancements and new features
-
- - Allow disorder predictions to be made on the current
- selection (or visible selection) in the same way that JPred works
- - allow import of data from gzipped files
- - Improved per-sequence 'colour-by-annotation' performance
- - Support '' style escaping of quotes in Newick files
- - group options for JABAWS service by command line name
- - Select primary source when selecting authority in database
- fetcher GUI
- - COMBINE statement uses current SEQUENCE_REF and GROUP_REF
- scope to group annotation rows
- - add .mfa to FASTA file extensions recognised by Jalview
- - groovy scripting for headless jalview operation
- - Output in Stockholm format
-
- Bug fixes
-
- - Uniprot and PDB database cross-reference fetching works
- properly
- - 'View all structures' in the desktop is more reliable
- - Web services parameter dialog box shows the options enabled
- for different presets
- - Interactive creation of RNA secondary structure works more
- smoothly
- - Keyboard mode 'P' command jumps to the right place
- - Improved support for parsing database cross-references via
- Stockholm and Rfam database
- - Improved semantics in annotation files for grouping
- annotation rows associated with particular sequences and groups
- - More robust DNA->Amino acid translation
- - Improved Headless-mode operation for DAS annotation
- retrieval, groovy script execution and alignment figure generation
- - annotation label tooltip text needs to be wrapped
-
+
+ Full details about Jalview 2.10.2 are in the Release Notes, but the
+ highlights are below.
+
+
+ - Update to JABAWS 2.2
Jalview's
+ alignment, protein conservation analysis, and protein disorder and
+ RNA secondary structure prediction services are now provided by JABAWS 2.2.
+ Several of the programs provided as services have been updated, so
+ their options and parameters have changed.
+ - New preferences for opening
+ web pages for database cross-references via the UK Elixir's
+ EMBL-EBI's MIRIAM database and identifiers.org services.
+
+ - Showing and hiding regions
+
+ - Hide
+ insertions in the PopUp menu has changed its behaviour.
+ Prior to 2.10.2, columns were only shown or hidden according
+ to gaps in the sequence under the popup menu. Now, only
+ columns that are gapped in all selected sequences as well as
+ the sequence under the popup menu are hidden, and column
+ visibility outside the selected region is left as is. This
+ makes it easy to filter insertions from the alignment view
+ (just select the region containing insertions to remove)
+ without affecting the rest of the hidden columns.
+
+
+
+ Experimental Features
+
+
+ This release of Jalview includes a new option in the Jalview Desktop
+ that allows you to try out features that are still in development.
+ To access the features described below, please first enable the Tools→Enable
+ Experimental Features option, and then restart Jalview.
+
+