What's new ?

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4dfc54e201bb54ba3074ac62ae61e29135f9e099;hb=f2450b343be28d1b46f71a809d3d85041bf5aa62;hp=5a3ed199f72ab0b9f8d16dc81d26543db1660f02;hpb=8c0737632c158907098990b81ac702710721e9f2;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 5a3ed19..4dfc54e 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,34 +1,57 @@ - -What's new ? - -

What's new ?

Jalview Version 2.08

Editing can be locked to selection area. - Any edits made within the locked area do not affect the rest of the alignment.

Keyboard editing - press F2 to toggle Cursor mode On / Off. For a full list - of keyboard controls, look here.

Create sequence features from Searches. - Previously results from searches were added as alignment positions, which was - wrong. Now the search results are saved as sequence features and their visibility - and colour can be modified using the Sequence - Feature Settings window.

Precalculated annotations can be loaded onto alignments. The Annotation - File format is a tab delimited set of values.

Features file allows grouping of - features. The Sequence Feature Settings - window then makes it very easy to set the visibility of groups of features. -

Annotation Colouring - scheme added. A new colour scheme which colours columns on a per-column value.

Smooth fonts off by default - Faster rendering. Toggle on / off from the View - menu, or can be set in Preferences.

Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.
-

Issues Resolved

Drag & Drop fixed on Linux

Jalview Archive file faster to load/save, sequence descriptions saved.
-

See the Release History page for details of all - new features and resolved issues.

- - + + + +What's new ? + + +

+ What's new in Jalview 2.10.5 ? +

Jalview 2.10.5 is a minor release that includes critical + patches for users working with Ensembl, and RNA secondary structure + annotation.

EPS, PNG and SVG export now includes hidden sequence + markers, and representative sequences are marked in bold.
Ensembl Client updated for Ensembl Rest API v7.
The + latest Ensembl API is not backwards compatible with earlier + versions of Jalview, so if you require Ensembl functionality you + will need to install this release. +
Improved support for VIENNA extended dot-bracket notation + for RNA secondary structure
Positional and selected region highlighting in VARNA + 'trimmed sequence' view now more reliable

+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The majority of improvement in 2.10.5 are due to Jalview users + contacting us via the jalview-discuss email list. Thanks to everyone + who took the time to do this !

Jalview and Java 10

This release addresses a critical bug for OSX users who are + running Jalview with Java 10 which can prevent files being saved + correctly through the 'Save As' dialog box. The 'Save As' dialog for + Jalview's Groovy Console remains affected - we hope to address this + in the next major release.

+ +