X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=4dfc54e201bb54ba3074ac62ae61e29135f9e099;hb=f2450b343be28d1b46f71a809d3d85041bf5aa62;hp=e453b5d8c20072a93cfcdec8de2c8413a4af9ad9;hpb=b46d87ba6875733cb9baf59e9391dcd69d4c0419;p=jalview.git
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-
-What's new
-
-What's new
-If you can read this then you'll already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
-
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment will create a "selection region"
- which may be full sequences or groups of residues.
- - To edit a sequence, the "Shift" key must be held down
- - To edit groups, either the "Alt" key or the "Control"
- key must be held down.
- - Colours maybe applied to the background, ie the whole alignment, or to selected
- regions. If the tickbox "Apply colour to all groups" is ticked (this
- is the defualt), then the colour will be applied to all groups.
- - Use the right mouse button (apple and click on the mac) to define a selected
- region on the alignment as a new group.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone! (and redone)
-
-
-
+
+
+
+What's new ?
+
+
+
+ What's new in Jalview 2.10.5 ?
+
+ Jalview 2.10.5 is a minor release that includes critical
+ patches for users working with Ensembl, and RNA secondary structure
+ annotation.
+
+ - EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.
+ - Ensembl Client updated for Ensembl Rest API v7.
The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.
+
+ - Improved support for VIENNA extended dot-bracket notation
+ for RNA secondary structure
+ - Positional and selected region highlighting in VARNA
+ 'trimmed sequence' view now more reliable
+
+
+ The full list of bugs fixed in this release can be found in the 2.10.5 Release Notes. The majority of improvement in 2.10.5 are due to Jalview users
+ contacting us via the jalview-discuss email list. Thanks to everyone
+ who took the time to do this !
+ Jalview and Java 10
+ This release addresses a critical bug for OSX users who are
+ running Jalview with Java 10 which can prevent files being saved
+ correctly through the 'Save As' dialog box. The 'Save As' dialog for
+ Jalview's Groovy Console remains affected - we hope to address this
+ in the next major release.
+
+