What's new ?
-Jalview Version 2.1
-The multiple sequence alignment program MAFFT - is available from the default Web Service list.
-The sequence feature retrieval system using DBFetch from EBI has been replaced - with DAS Feature fetching capabilities.
- -Export Annotations and Features
-GFF file reading / writing
-Associate structures with sequences from local PDB files
-Add sequences to exisiting alignment
-Recently opened files / URL lists
-Applet can launch the full application
-Applet has transparency for features (Java 1.2 required)
-Applet has user defined colours parameter
--
Issues Resolved
-Redundancy Panel reinstalled in the Applet
-Monospaced font - EPS / rescaling bug fixed
-Annotation files with sequence references bug fixed
--
See the Release History page for details of all - new features and resolved issues.
- - + + +What's new ?
+ +Jalview Version 2.2
+Multiple views with different styles, colours, hidden regions for +one alignment
+Easily add, amend and delete sequence features
+"Reload" alignment from File or URL to revert to +original
+"Save" to current filename or "Save As" to +new filename
+New "New Window" button on the +"Output To Textbox" opens output window for quick 'sequence +editing'.
+Set different text colour for dark or light background
+Right align sequence ids
+Set colour of lower case residues in a user defined colour scheme +
+Menu Rearrangements: New Format for alignment +layout and Select for region selection.
+ +Menu item accelerator keys added
+Control-V pastes sequences to active window, Control-Shift-V +pastes to a new window.
+Raise/Minimise alignment and all associated windows from desktop +window's window menu
+Select and colour whole branches of a tree
+'New Window' button on the 'Output to Text box' alignment output +option to open a new alignment window after editing.
+Issues Resolved
+ +Optimisations for large alignments: faster multithreaded +calculations and Undo/Redo system.
+Remove empty columns - if empty columns exist at the end of the +alignment bug fixed.
+DAS feature fetching slowed down, doesn't overload DAS servers
+DAS feature fetching can be cancelled
+Correct display of > and < symbols for feature descriptions +without explicit <html> tags.
+Zoom working in PCA viewer
+Sequence Descriptions retained after running a web service
++
See the Release History page for +details of all new features and resolved issues.
+ +