X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=651292e0b5fa6c4ba15bda5a770cab93160a03b1;hb=cbc6aa4a407ef66ae0f5b54fd8dbcd6018a2515a;hp=bd57b81b2859697831859af7babf8ebab04729d5;hpb=b5edbd2a03d16372bc3e8019ddbf3840dcfe38ed;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index bd57b81..651292e 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,30 +1,50 @@ - -What's new ? - -

What's new ?

-

Jalview Version 2.07

-

Sequence Fetcher has been added to quickly - retrieve sequences with known ids from several databases.

-

Sequence Features enhanced to allow - the user to display all features of a Uniprot file on the alignment and subsequently - colour, hide or show overlapping features.

-

Choose to omit /start-end from sequences when - saving files. This is important for saving files to be used by some programs - which cannot read the original Jalview sequence output with the appended /start-end.

-

PDB structure viewer enhanced. Mapping - between sequence and structure has been enhanced, colours on the alignment are - reflected in the structure viewer.

-

Jalview Applet can read - in feature files, PDB files be used as input to HTML form See the website - to find out the new parameters available for the Applet Version of Jalview.

-

 

-

Issues Resolved

-

Group Editing is possible with Control and mouse click. Alt key and mouse press - does not work as this translates as the middle mouse button, which since 2.04 - is now used to scroll the alignment and change the font size.

-

HTML export now writes groups and features which were previously missing.

-

 

-

See the Release History page for details of all - new features and resolved issues.

- - + + +What's new ? + + +

What's new ?

+ +

Jalview Version 2.2

+

Multiple views with different styles, colours, hidden regions for +one alignment

+

Easily add, amend and delete sequence features

+

"Reload" alignment from File or URL to revert to +original

+

"Save" to current filename or "Save As" to +new filename

+

New "New Window" button on the +"Output To Textbox" opens output window for quick 'sequence +editing'.

+

Set different text colour for dark or light background

+

Right align sequence ids

+

Set colour of lower case residues in a user defined colour scheme +

+

Menu Rearrangements: New Format for alignment +layout and Select for region selection.

+

+

Menu item accelerator keys added

+

Control-V pastes sequences to active window, Control-Shift-V +pastes to a new window.

+

Raise/Minimise alignment and all associated windows from desktop +window's window menu

+

Select and colour whole branches of a tree

+

'New Window' button on the 'Output to Text box' alignment output +option to open a new alignment window after editing.

+

Issues Resolved

+

+

Optimisations for large alignments: faster multithreaded +calculations and Undo/Redo system.

+

Remove empty columns - if empty columns exist at the end of the +alignment bug fixed.

+

DAS feature fetching slowed down, doesn't overload DAS servers

+

DAS feature fetching can be cancelled

+

Correct display of > and < symbols for feature descriptions +without explicit <html> tags.

+

Zoom working in PCA viewer

+

Sequence Descriptions retained after running a web service

+

 

+

See the Release History page for +details of all new features and resolved issues.

+ +