X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=651292e0b5fa6c4ba15bda5a770cab93160a03b1;hb=cbc6aa4a407ef66ae0f5b54fd8dbcd6018a2515a;hp=bd57b81b2859697831859af7babf8ebab04729d5;hpb=b5edbd2a03d16372bc3e8019ddbf3840dcfe38ed;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index bd57b81..651292e 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,30 +1,50 @@ - -
What's new ?
-Jalview Version 2.07
-Sequence Fetcher has been added to quickly - retrieve sequences with known ids from several databases.
-Sequence Features enhanced to allow - the user to display all features of a Uniprot file on the alignment and subsequently - colour, hide or show overlapping features.
-Choose to omit /start-end from sequences when - saving files. This is important for saving files to be used by some programs - which cannot read the original Jalview sequence output with the appended /start-end.
-PDB structure viewer enhanced. Mapping - between sequence and structure has been enhanced, colours on the alignment are - reflected in the structure viewer.
-Jalview Applet can read - in feature files, PDB files be used as input to HTML form See the website - to find out the new parameters available for the Applet Version of Jalview.
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Issues Resolved
-Group Editing is possible with Control and mouse click. Alt key and mouse press - does not work as this translates as the middle mouse button, which since 2.04 - is now used to scroll the alignment and change the font size.
-HTML export now writes groups and features which were previously missing.
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See the Release History page for details of all - new features and resolved issues.
- - + + +What's new ?
+ +Jalview Version 2.2
+Multiple views with different styles, colours, hidden regions for +one alignment
+Easily add, amend and delete sequence features
+"Reload" alignment from File or URL to revert to +original
+"Save" to current filename or "Save As" to +new filename
+New "New Window" button on the +"Output To Textbox" opens output window for quick 'sequence +editing'.
+Set different text colour for dark or light background
+Right align sequence ids
+Set colour of lower case residues in a user defined colour scheme +
+Menu Rearrangements: New Format for alignment +layout and Select for region selection.
+ +Menu item accelerator keys added
+Control-V pastes sequences to active window, Control-Shift-V +pastes to a new window.
+Raise/Minimise alignment and all associated windows from desktop +window's window menu
+Select and colour whole branches of a tree
+'New Window' button on the 'Output to Text box' alignment output +option to open a new alignment window after editing.
+Issues Resolved
+ +Optimisations for large alignments: faster multithreaded +calculations and Undo/Redo system.
+Remove empty columns - if empty columns exist at the end of the +alignment bug fixed.
+DAS feature fetching slowed down, doesn't overload DAS servers
+DAS feature fetching can be cancelled
+Correct display of > and < symbols for feature descriptions +without explicit <html> tags.
+Zoom working in PCA viewer
+Sequence Descriptions retained after running a web service
++
See the Release History page for +details of all new features and resolved issues.
+ +