X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=6901f61751da2ebf4eaa35e52055da82533c1ffb;hb=11ca0240a5792724d5e890de9fbd63cb2f11093a;hp=1f2b22147b646b85a20b3342032dcdcc9344c818;hpb=c02981a7d326f468c33f39f84992a0b183009121;p=jalview.git
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@@ -24,56 +24,33 @@
- What's new in Jalview 2.10.2 ?
+ What's new in Jalview 2.10.3 ?
- Full details about Jalview 2.10.2 are in the Release Notes, but the
- highlights are below.
+ Version 2.10.3 was released in November 2017. The full list of
+ bug fixes and new features can be found in the 2.10.3 Release Notes, but
+ the highlights are below.
- - New UI, and faster and more configurable
- implementation for PCA, Neighbour-Joining and UPGMA Trees
- Menu entries for calculating PCA and different types of tree have
- been replaced by a single Calculations dialog box. The
- underlying implementation for the PCA and tree calculations have
- been made faster and more memory efficient. A new framework has
- also been created for the score models used to calculate distances
- between sequences. This framework allows import of substitution
- matrices in NCBI and AAIndex format, and custom score models to be
- created via a groovy script.
- - Update to JABAWS 2.2
Jalview's
- alignment, protein conservation analysis, and protein disorder and
- RNA secondary structure prediction services are now provided by JABAWS 2.2.
- Several of the programs provided as services have been updated, so
- their options and parameters have changed.
- - New preferences for opening
- web pages for database cross-references via the UK Elixir's
- EMBL-EBI's MIRIAM database and identifiers.org services.
+
- Faster and more responsive UI when importing and working
+ with wide alignments and handling hundreds and thousands of
+ sequence features
+ - Improved usability with PDB and UniProt Free Text
+ Search dialog, and new tab for retrieval of sequences for lists of
+ IDs.
- - Showing and hiding regions
-
- - Hide
- insertions in the PopUp menu has changed its behaviour.
- Prior to 2.10.2, columns were only shown or hidden according
- to gaps in the sequence under the popup menu. Now, only
- columns that are gapped in all selected sequences as well as
- the sequence under the popup menu are hidden, and column
- visibility outside the selected region is left as is. This
- makes it easy to filter insertions from the alignment view
- (just select the region containing insertions to remove)
- without affecting the rest of the hidden columns.
-
+ - Short names assigned to sequences retrieved from UniProt
Experimental Features
- This release of Jalview includes a new option in the Jalview Desktop
- that allows you to try out features that are still in development.
- To access the features described below, please first enable the Tools→Enable
- Experimental Features option, and then restart Jalview.
+ Remember, please enable the Experimental Features option in
+ the Jalview Desktop's Tools menu, and then restart Jalview
+ if you want to try out features below:
- Annotation transfer between Chimera and Jalview
Two
@@ -81,16 +58,6 @@
the Chimera viewer's Chimera menu allow positional annotation to
be exchanged between Chimera and Jalview.
-
- Scripting
New groovy examples
- demonstrate Jalview 2.10.2 APIs for creation of data-driven
- colourschemes, and custom alignment file handlers. The FeatureAnnotationWorker
- introduced in Jalview 2.10 has also been refactored to allow
- efficient counting across multiple feature types. Please be aware
- that feature counter scripts created for earlier versions will not
- execute in Jalview 2.10.2.
-
+