X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=736e786392803ba2652d9dd8f443a0b37793bda4;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=344c322233d893da5d0fd96edbcb175d510b5380;hpb=85fb1c79fd82d7eada801624f745635632be8362;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 344c322..736e786 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,54 +1,87 @@ -
What's new ?
++ What's new ? +
++ Jalview 2.9 has been in development since December 2014. In addition + to a multitude of bug fixes and minor improvements (both small, and + rather big!), it also brings major new capabilities for codon-level + analysis of protein alignments and the retrieval and manipulation of + structural data.
For the full list of changes, see the + Jalview 2.9 Release Notes. +
++ Highlights in Jalview 2.9 +
Jalview Version 2.2
-Multiple views with different styles, colours, hidden regions for one alignment -
-Easily add, amend and delete sequence features -
-"Reload" alignment from File or URL to revert to original -
-"Save" to current filename or "Save As" to new filename -
-Set different text colour for dark or light background -
-Right align sequence ids -
-Set colour of lower case residues in a user defined colour scheme -
-Menu Rearrangements: New Format for alignment layout and Select for region selection. -
-Menu item accelerator keys added -
-Control-V pastes sequences to active window, Control-Shift-V pastes to a new window. -
-Raise/Minimise alignment and all associated windows from desktop window's window menu -
-Select and colour whole branches of a tree
-'New Window' button on the 'Output to Text box' alignment output -option to open a new alignment window after editing.
-Issues Resolved
- --Optimisations for large alignments: faster multithreaded calculations and Undo/Redo system. -
-Remove empty columns - if empty columns exist at the end of the -alignment bug fixed. -
-DAS feature fetching slowed down, doesn't overload DAS servers -
-DAS feature fetching can be cancelled -
-Correct display of > and < symbols for feature descriptions without explicit <html> tags. -
-Zoom working in PCA viewer -
-Sequence Descriptions retained after running a web service -
--
See the Release History page for details of all - new features and resolved issues.