X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=75afae872444fa133618b222e0fdd898faa8f6ab;hb=5ba0be3c2257b380e292c53d47993b78ece4892d;hp=249fc89e05912599f452e56b830aeafa57e1ba41;hpb=3396e9f33cf3a16a7f38f5163cd057df4b859e7e;p=jalview.git
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-Whats new
+
+What's new ?
+
-Whats new
-If you can read this then you'll already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
-
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment will create a "selection region"
- which may be full sequences or groups of residues.
- - To edit a sequence, the "Shift" key must be held down
- - To edit groups, either the "Alt" key or the "Control"
- key must be held down.
- - Colours maybe applied to the background, ie the whole alignment, or to selected
- regions. If the tickbox "Apply colour to all groups" is ticked (this
- is the defualt), then the colour will be applied to all groups.
- - Use the right mouse button (apple and click on the mac) to define a selected
- region on the alignment as a new group.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone! (and redone)
+What's new ?
+
+Jalview Version 2.3
+Jmol 11.0.2 integration
+ PDB views stored in Jalview XML files
+Slide sequences
+Edit sequence in place
+EMBL CDS features
+DAS Feature mapping
+Feature ordering
+Alignment Properties
+Annotation Scores
+Sort by scores
+Feature/annotation editing in applet
+
+Issues Resolved
+
+ Headless state operation in 2.2.1
+ Incorrect and unstable DNA pairwise alignment
+ Cut and paste of sequences with annotation
+ Feature group display state in XML
+ Feature ordering in XML
+ 2.2.1 applet had no feature transparency
+ Number pad keys can be used in cursor mode
+ Structure Viewer mirror image resolved
+
+See the Release History page for
+details of all new features and resolved issues.