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What's new ?
-
- What's new ?
Jalview 2.8.1 includes a range of new features developed in the last 12 months.
As usual you can find the
- highlights below, and the comprehensive list is given in the Jalview 2.8.1 Release Notes.
-
- Internationalisation
-
- In August 2013, David Róldan-Martinez took on the task of
- internationalising Jalview's user interface. He also recruited Sara
- Hernández DÃaz and Laura Ferrandis Martinez who created Jalview's
- first spanish user interface translation.
If you notice any
- problems, or would like to help translate Jalview's user interface
- into other languages, please sign up at issues.jalview.org and put in
- a feature request for your translation to the i18n component, and
- David or Jim will get in contact with you.
-
- Enhancements and new features
-
- -
-
- Extended the feature settings dialog to allow columns to be selected containing particular sequence features.
-
- Bug fixes
-
+
+ What's new in Jalview 2.10.2 ?
+
+
+ Full details about Jalview 2.10.2 are in the Release Notes, but the
+ highlights are below.
+
+
+ - New UI, and faster and more configurable implementation for PCA, Neighbour-Joining and UPGMA Trees
+ Menu entries for calculating PCA and different types of tree have
+ been replaced by a single Calculations dialog box. The
+ underlying implementation for the PCA and tree calculations have been
+ made faster and more memory efficient. A new framework has also been
+ created for the score models used to calculate distances between
+ sequences. This framework allows import of substitution matrices in
+ NCBI and AAIndex format, and custom score models to be created via a
+ groovy script.
+ - Update to JABAWS 2.2
Jalview's
+ alignment, protein conservation analysis, and protein disorder and
+ RNA secondary structure prediction services are now provided by JABAWS 2.2.
+ Several of the programs provided as services have been updated, so
+ their options and parameters have changed.
+ - New preferences for opening
+ web pages for database cross-references via the UK Elixir's
+ EMBL-EBI's MIRIAM database and identifiers.org services.
+
+ - Showing and hiding regions
+
+ - Hide
+ insertions in the PopUp menu has changed its behaviour.
+ Prior to 2.10.2, columns were only shown or hidden according
+ to gaps in the sequence under the popup menu. Now, only
+ columns that are gapped in all selected sequences as well as
+ the sequence under the popup menu are hidden, and column
+ visibility outside the selected region is left as is. This
+ makes it easy to filter insertions from the alignment view
+ (just select the region containing insertions to remove)
+ without affecting the rest of the hidden columns.
+
+
+
+ Experimental Features
+
+
+ This release of Jalview includes a new option in the Jalview Desktop
+ that allows you to try out features that are still in development.
+ To access the features described below, please first enable the Tools→Enable
+ Experimental Features option, and then restart Jalview.
+
+