What's new ?
-Jalview Version 2.07
-Sequence Fetcher has been added to quickly - retrieve sequences with known ids from several databases.
-Sequence Features enhanced to allow - the user to display all features of a Uniprot file on the alignment and subsequently - colour, hide or show overlapping features.
-Choose to omit /start-end from sequences when - saving files. This is important for saving files to be used by some programs - which cannot read the original Jalview sequence output with the appended /start-end.
-PDB structure viewer enhanced. Mapping - between sequence and structure has been enhanced, colours on the alignment are - reflected in the structure viewer.
-Jalview Applet can read - in feature files, PDB files be used as input to HTML form See the website - to find out the new parameters available for the Applet Version of Jalview.
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Jalview Version 2.08
+Editing can be locked to the selection area. + Any edits made within the locked area do not affect the rest of the alignment.
+Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list + of keyboard controls, look here.
+Create sequence features from searches. + Previously results from searches were added as alignment positions, which was + wrong. Now the search results are saved as sequence features and their visibility + and colour can be modified using the Sequence + Feature Settings window.
+Precalculated annotations can be loaded onto alignments. The Annotation + File format is a tab delimited set of values.
+Features file allows grouping of + features. The Sequence Feature Settings + window then makes it very easy to set the visibility of groups of features. +
+Annotation Colouring + scheme added. A new colour scheme which colours columns on a per-column value.
+Smooth fonts off by default - faster rendering. Toggle on / off from the View + menu, or can be set in Preferences.
+ Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.
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Issues Resolved
-Group Editing is possible with Control and mouse click. Alt key and mouse press - does not work as this translates as the middle mouse button, which since 2.04 - is now used to scroll the alignment and change the font size.
-HTML export now writes groups and features which were previously missing.
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See the Release History page for details of all +
Drag & Drop fixed on Linux
+ Jalview Archive file faster to load/save, sequence descriptions saved.
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See the Release History page for details of all new features and resolved issues.