What's new

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=8c28564b88fd535421d6938c6ca2bad0311930d2;hb=7cdae57d68efc9bae8e64511bd7d41eda7d6c33d;hp=dc956a97fb188bc7cbcd1bd5225fd89eefb80a81;hpb=1ccaed89cec493136eb0f5ac22f2942dd8ce9bb0;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index dc956a9..8c28564 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,30 +1,34 @@ -What's new +What's new ? -

What's new

If you can read this then you'll already have seen some of the recent changes - made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments - in the Java programming language. For instance Jalview is now a multi windowed - application, this keeps all your Jalview windows neatly together in one main - application window.

If you were familiar with the original Jalview, here is a list of important - features you should know about the current development:

Editing sequences is no longer the default when mouse clicking the alignment. - Instead, mouse clicking on the alignment will create a "selection region" - which may be full sequences or groups of residues.
To edit a sequence, the "Shift" key must be held down
To edit groups, either the "Alt" key or the "Control" - key must be held down.
Colours maybe applied to the background, ie the whole alignment, or to selected - regions. If the tickbox "Apply colour to all groups" is ticked (this - is the default), then the colour will be applied to all groups.
Use the right mouse button (apple and click on the mac) to define a selected - region on the alignment as a new group.
Conservation is automatically updated whenever the alignment is edited
There is no "quick draw" option
Edits can be undone! (and redone)

What's new ?

Jalview Version 2.08

Editing can be locked to the selection area. + Any edits made within the locked area do not affect the rest of the alignment.

Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list + of keyboard controls, look here.

Create sequence features from searches. + Previously results from searches were added as alignment positions, which was + wrong. Now the search results are saved as sequence features and their visibility + and colour can be modified using the Sequence + Feature Settings window.

Precalculated annotations can be loaded onto alignments. The Annotation + File format is a tab delimited set of values.

Features file allows grouping of + features. The Sequence Feature Settings + window then makes it very easy to set the visibility of groups of features. +

Annotation Colouring + scheme added. A new colour scheme which colours columns on a per-column value.

Smooth fonts off by default - faster rendering. Toggle on / off from the View + menu, or can be set in Preferences.

Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.
+

Issues Resolved

Drag & Drop fixed on Linux

Jalview Archive file faster to load/save, sequence descriptions saved.
+

See the Release History page for details of all + new features and resolved issues.