X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=965edea3f8725be155776a0a09a739e9704d5d27;hb=5bcae030b489e670c6983aa97eb9b6d8a6bbbbd5;hp=ec402907cde6fab69ddf6142f694fc9470cb9475;hpb=1693646e78fb0dddebcd94f8bef7e2acd3bdaae0;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
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-
-
-
-Whats new
-If you can read this then you'll already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
-
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment will create a "selection region"
- which may be full sequences or groups of residues.
- - To edit a sequence, the "Shift" key must be held down
- - To edit groups, either the "Alt" key or the "Control"
- key must be held down.
- - Colours maybe applied to the background, ie the whole alignment, or to selected
- regions. If the tickbox "Apply colour to all groups" is ticked (this
- is the defualt), then the colour will be applied to all groups.
- - Use the right mouse button (apple and click on the mac) to define a selected
- region on the alignment as a new group.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone! (and redone)
-
-
-
+
+What's new ?
+
+What's new ?
+If you are reading this then you will already have seen some of the recent changes
+ made to Jalview.
+ Jalview takes advantage of some of the more recent user interface developments
+ in the Java programming language. For instance Jalview is now a multi windowed
+ application, this keeps all your Jalview windows neatly together in one main
+ application window.
+If you were familiar with the original Jalview, here is a list of important
+ features you should know about the current development:
+
+ - Editing sequences is no longer the default when mouse clicking the alignment.
+ Instead, mouse clicking on the alignment creates a "selection region"
+ which may be full sequences or groups of residues.
+ - To insert or edit the gaps in one sequence in alignment, the
+ "Shift" key must be held down when dragging the mouse.
+ - To insert or edit gaps for a group of sequences, the
+ "Alt" key (or in X windows the "Control"
+ key) must be held down.
+ - Selecting colour schemes in the colour menu either sets just the
+ "background" colourscheme for the alignment, or - when
+ the tickbox "Apply colour to all groups" is ticked,
+ applies the scheme to the background and all groups defined on the alignment.
+ - Use the right mouse button (apple and click on the Mac) whilst
+ the pointer is within the selection area to access the "define" region menu to
+ define a new region, give it a name, and change its colourscheme and display
+ properties.
+ - Conservation is automatically updated whenever the alignment is edited
+ - There is no "quick draw" option
+ - Edits can be undone, and redone!
+
+
+