What's new ?
-Jalview Version 2.08
-Editing can be locked to the selection area. - Any edits made within the locked area do not affect the rest of the alignment.
-Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list - of keyboard controls, look here.
-Create sequence features from searches. - Previously results from searches were added as alignment positions, which was - wrong. Now the search results are saved as sequence features and their visibility - and colour can be modified using the Sequence - Feature Settings window.
-Precalculated annotations can be loaded onto alignments. The Annotation - File format is a tab delimited set of values.
-Features file allows grouping of - features. The Sequence Feature Settings - window then makes it very easy to set the visibility of groups of features. -
-Annotation Colouring - scheme added. A new colour scheme which colours columns on a per-column value.
-Smooth fonts off by default - faster rendering. Toggle on / off from the View - menu, or can be set in Preferences.
- Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.
-
Jalview Version 2.1
+The multiple sequence alignment program MAFFT + is available from the default Web Service list.
+The sequence feature retrieval system using DBFetch from EBI has been replaced + with DAS Feature fetching capabilities.
+ +Export Annotations and Features
+GFF file reading / writing
+Associate structures with sequences from local PDB files
+Add sequences to existing alignment
+Recently opened files / URL lists
+Applet can launch the full application
+Applet has transparency for features (Java 1.2 required)
+Applet has user defined colours parameter
+
Issues Resolved
-Drag & Drop fixed on Linux
- Jalview Archive file faster to load/save, sequence descriptions saved.
-
Redundancy Panel reinstalled in the Applet
+Monospaced font - EPS / rescaling bug fixed
+Annotation files with sequence references bug fixed
+
See the Release History page for details of all new features and resolved issues.