X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=cf96d474e209855f2d8c501f9bb9c81286f6b97b;hb=190a4893d444dde29d9bc2c825b483491fa0088d;hp=dc956a97fb188bc7cbcd1bd5225fd89eefb80a81;hpb=1ccaed89cec493136eb0f5ac22f2942dd8ce9bb0;p=jalview.git
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index dc956a9..cf96d47 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,30 +1,103 @@
-
-What's new
-
-What's new
-If you can read this then you'll already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
-
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment will create a "selection region"
- which may be full sequences or groups of residues.
- - To edit a sequence, the "Shift" key must be held down
- - To edit groups, either the "Alt" key or the "Control"
- key must be held down.
- - Colours maybe applied to the background, ie the whole alignment, or to selected
- regions. If the tickbox "Apply colour to all groups" is ticked (this
- is the default), then the colour will be applied to all groups.
- - Use the right mouse button (apple and click on the mac) to define a selected
- region on the alignment as a new group.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone! (and redone)
-
-
-
+
+
+
+What's new ?
+
+
+
+ What's new ?
+
+
+ The Jalview 2.7 release features new web services, and important
+ improvements to the way in which Jalview handles alignments and
+ associated PDB structures, as well as numerous minor improvements and
+ bug fixes. Version 2.7 of the JalviewLite applet also features a
+ significantly enhanced Javascript API enabling it to be more easily
+ integrated with javascript based web applications.
For full
+ details see the Jalview 2.7
+ release history.
+
+
+ Highlights in Jalview Desktop Version 2.7
+
+
+
+
+ Issues Resolved (a select list - see the release history for full details)
+
+
+
+ Issues in the Jalview Desktop
+
+ - Problems viewing associated structures for sequences
+ retrieved from UNIPROT
+ - Problems viewing Jalview projects from older versions in
+ version 2.6
+ - Preservation of hidden annotation rows and tree bootstrap
+ values in projects
+ - Newly added JABAWS servers not always visible in web services
+ menu
+
+ Issues specific to the JalviewLite Applet
+
+ - Layout problems when lots of annotation rows are displayed
+ - <= shown as = in annotation row tooltip
+ - export features raises exception when no features exist
+ - relative URLs not handled properly when used in parameters
+ and annotation files
+
+ Issues affecting both applet and application
+
+ - sequence numbering not preserved in MSF alignment output
+ - sequence associated secondary structure not correctly parsed
+ in interleaved stockholm
+ - sequences containing lowercase letters are not properly
+ associated with their pdb files
+ - Jalview PDB file reader does not extract sequence from deoxy
+ nucleotide chains correctly
+ - Sequence length given in alignment properties window is off
+ by 1
+
+
+