X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=d1d141d30b133f0a400e7fb369ebe9cce029c4d5;hb=47fd498a6fe7d2e3350a9e87c526bf1e59d00be5;hp=7fa98068aeb4b86d2713b5985d58fa64e8061ba5;hpb=4e377b5c02352a12537100dddd2f8a2b84536205;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 7fa9806..d1d141d 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,34 +1,78 @@ - -
What's new ?
-Jalview Version 2.08
-Editing can be locked to the selection area. - Any edits made within the locked area do not affect the rest of the alignment.
-Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list - of keyboard controls, look here.
-Create sequence features from searches. - Previously results from searches were added as alignment positions, which was - wrong. Now the search results are saved as sequence features and their visibility - and colour can be modified using the Sequence - Feature Settings window.
-Precalculated annotations can be loaded onto alignments. The Annotation - File format is a tab delimited set of values.
-Features file allows grouping of - features. The Sequence Feature Settings - window then makes it very easy to set the visibility of groups of features. -
-Annotation Colouring - scheme added. A new colour scheme which colours columns on a per-column value.
-Smooth fonts off by default - faster rendering. Toggle on / off from the View - menu, or can be set in Preferences.
- Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.
-
Issues Resolved
-Drag & Drop fixed on Linux
- Jalview Archive file faster to load/save, sequence descriptions saved.
-
See the Release History page for details of all - new features and resolved issues.
- - + + + ++ What's new in Jalview 2.10.1 ? +
++ Jalview 2.10.1 was released on 29th November 2016. Full details are + in the Jalview 2.10.1 + Release Notes, but the highlights are below. This is also the + first release to include contributions from Kira Mourão, who + joined Jalview's core development team in October 2016. +
+
+ Warning dialog about updating
+ your configured URL links
In the desktop prior to Jalview
+ 2.10.1, the only way to configure custom links for a particular
+ database cross-reference for a sequence was to give it a name that exactly
+ matched the database source, and a regular expression for filtering
+ out any spurious matches generated when the custom linked was tested
+ against the Sequence's ID string. Since the introduction of the
+ $DB_ACCESSION$ token, however, $SEQUENCE_ID$ will not be used for
+ database cross-reference accession strings, and if you have custom
+ links configured, Jalview will raise a warning message so let you
+ know that you may need to update your links to use $DB_ACCESSION$.
+