What's new ?

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=d1d141d30b133f0a400e7fb369ebe9cce029c4d5;hb=47fd498a6fe7d2e3350a9e87c526bf1e59d00be5;hp=a016a3514c48a7c2bd43d6f5df8e86690504f265;hpb=3c9a109fe89504b4713bfaf612275edc8c07e433;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index a016a35..d1d141d 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,52 +1,78 @@ + --> What's new ? -

- What's new ?
Jalview 2.8.1 includes a range of new features developed in the last 12 months.
As usual you can find the - highlights below, and the comprehensive list is given in the Jalview 2.8.1 Release Notes. -

- Internationalisation -

- In August 2013, David RÃ³ldan-Martinez took on the task of - internationalising Jalview's user interface. He also recruited Sara - HernÃ¡ndez DÃaz and Laura Ferrandis Martinez who created Jalview's - first spanish user interface translation.
If you notice any - problems, or would like to help translate Jalview's user interface - into other languages, head over to issues.jalview.org - and put in a feature request describing the translations you can - provide to the i18n - component.
- David has also put together some documentation about getting started with i18n translations -

- Enhancements and new features -

-
Extended the feature settings dialog to select columns containing particular sequence features.

- Bug fixes -

- +

+ What's new in Jalview 2.10.1 ? +

+ Jalview 2.10.1 was released on 29th November 2016. Full details are + in the Jalview 2.10.1 + Release Notes, but the highlights are below. This is also the + first release to include contributions from Kira Mourão, who + joined Jalview's core development team in October 2016. +

More memory efficient
We've slimmed + down the consensus analysis data structures used by Jalview so + even wider alignments can be worked with.
Select highlighted region
Press 'B' + or use the new menu option in the alignment window's Select menu + to mark columns containing highlighted regions generated from + structure selections, mouse-overs, or resulting from a Find + operation.
New custom link mechanism for opening URLs + for database cross references.
If you have customised URL + links in your Jalview preferences, then you may already have seen + the warning dialog (see below).
New command line export option for BioJS + MSAviewer
A number of small bugs with the HTML export + functions from the Jalview desktop were also fixed.
Small but significant changes to the + physicochemical properties and consensus calculations
Threonine + is no longer considered a non-hydrophobic residue in the protein + conservation calculation, and minor bugs addressed in PID and + consensus colouring.
Correct display of disulphide bond + features
In linked structure views, Jalview would + highlight all residues between in addition to the two linked + cysteines. The 'select columns by feature' function in the feature + settings would also select all intermediate columns. +

+ +

+ Warning dialog about updating + your configured URL links
In the desktop prior to Jalview + 2.10.1, the only way to configure custom links for a particular + database cross-reference for a sequence was to give it a name that exactly + matched the database source, and a regular expression for filtering + out any spurious matches generated when the custom linked was tested + against the Sequence's ID string. Since the introduction of the + $DB_ACCESSION$ token, however, $SEQUENCE_ID$ will not be used for + database cross-reference accession strings, and if you have custom + links configured, Jalview will raise a warning message so let you + know that you may need to update your links to use $DB_ACCESSION$. +