X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=dd536b10e9d2a48ebc4d2f6104455c8d89ea8f55;hb=9493ac8f3b6a02d3cf9747ed6c0d6cf407d284e8;hp=c260b5a960e861cffb0cc992ca0079664b7f10b0;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index c260b5a..dd536b1 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,62 +1,76 @@ + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + --> What's new ?

- What's new ? -

+ What's new ?

- Jalview 2.8 includes a brand new logo, which you'll see in file browsers, splash screens, and also on the new look Jalview site. + Jalview 2.8.1 includes new features for group creation, RNA secondary + structure prediction and a host bug fixes. It also includes support + for version 2.1 + of JABA and includes a Spanish translation of its user interface.
+ The highlights are detailed below, and the full list is given in the Jalview 2.8.1 Release Notes.

+

The Desktop and web based applet include new keystrokes for + defining and undefining groups, and PAM250 has been added to the range + of score models available for use by the tree and PCA calculations. + The Jalview project file format has also been extended for handling + RNA and protein secondary structure annotation, in anticipation for + new structure based secondary structure support in Jalview 2.8.2.

+

Internationalisation

+

Jalview 2.8.1 is the first release to include support for + displaying Jalview's user interface in different languages. In August + 2013, David Roldán-Martinez took on the task of + internationalising Jalview's user interface. He also recruited Sara + Hernández Díaz and Laura Ferrandis Martinez who created + Jalview's first spanish user interface translation.

- In addition to our new look, Jalview 2.8 includes a number of new - features.. some of which have been in development since July 2010. The - highlights are below, and - as usual, for a comprehensive list, take a - look at the Jalview 2.8 Release - Notes. + If you notice any problems, or would like to help translate Jalview's + user interface into other languages, head over to issues.jalview.org and put in a + feature request describing the translations you can provide to the i18n + component. David has also documented + the process of creating i18n translations to help you get started.

+

RNA Secondary Structure Prediction with JABA 2.1

- Highlights in Jalview Desktop Version 2.8 -

- - + This version of Jalview includes a client to access the new services available in JABA v2.1 , which + provides services for RNA consensus secondary structure prediction and + two new alignment programs (GLProbs and MSAProbs).

- Issues Resolved (a select list - see the release history for full details) - + To see how to perform RNA secondary structure predictions like the one below, take a look at the RNAAliFold + client documentation.

-

- Issues in the Jalview Desktop -

- Issues specific to the JalviewLite Applet - - Issues affecting both applet and application - +
+
The RNAalifold client was implemented by Jalview's 2013 + summer student, Dan Barton. +