X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=dd536b10e9d2a48ebc4d2f6104455c8d89ea8f55;hb=c2214808f64b811a25cec10399dcff38db0c592c;hp=b099c3b142e676a55f94a5e7b02980c082d85cd8;hpb=2eeea2f43d7bbaafd79ebd4185b42fc60646d9e3;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index b099c3b..dd536b1 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,28 +1,76 @@ - -
What's new ?
-Jalview Version 2.1
-The multiple sequence alignment program MAFFT - is available from the default Web Service list.
-The sequence feature retrieval system using DBFetch from EBI has been replaced - with DAS Feature fetching capabilities.
- -Export Annotations and Features
-GFF file reading / writing
-Associate structures with sequences from local PDB files
-Add sequences to existing alignment
-Recently opened files / URL lists
-Applet can launch the full application
-Applet has transparency for features (Java 1.2 required)
-Applet has user defined colours parameter
--
Issues Resolved
-Redundancy Panel reinstalled in the Applet
-Monospaced font - EPS / rescaling bug fixed
-Annotation files with sequence references bug fixed
--
See the Release History page for details of all - new features and resolved issues.
- - + + + ++ What's new ?
+
+ Jalview 2.8.1 includes new features for group creation, RNA secondary
+ structure prediction and a host bug fixes. It also includes support
+ for version 2.1
+ of JABA and includes a Spanish translation of its user interface.
+ The highlights are detailed below, and the full list is given in the Jalview 2.8.1 Release Notes.
+
The Desktop and web based applet include new keystrokes for + defining and undefining groups, and PAM250 has been added to the range + of score models available for use by the tree and PCA calculations. + The Jalview project file format has also been extended for handling + RNA and protein secondary structure annotation, in anticipation for + new structure based secondary structure support in Jalview 2.8.2.
+Internationalisation
+Jalview 2.8.1 is the first release to include support for + displaying Jalview's user interface in different languages. In August + 2013, David Roldán-Martinez took on the task of + internationalising Jalview's user interface. He also recruited Sara + Hernández Díaz and Laura Ferrandis Martinez who created + Jalview's first spanish user interface translation.
++ If you notice any problems, or would like to help translate Jalview's + user interface into other languages, head over to issues.jalview.org and put in a + feature request describing the translations you can provide to the i18n + component. David has also documented + the process of creating i18n translations to help you get started. +
+RNA Secondary Structure Prediction with JABA 2.1
++ This version of Jalview includes a client to access the new services available in JABA v2.1 , which + provides services for RNA consensus secondary structure prediction and + two new alignment programs (GLProbs and MSAProbs).
++ To see how to perform RNA secondary structure predictions like the one below, take a look at the RNAAliFold + client documentation. +
+