What's new ?

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=e16949e9709ef0a36e22945c21cb632fbfd748da;hb=3d5d8043f5eaa6e5ca903289a7d136125d3ed1c1;hp=cf96d474e209855f2d8c501f9bb9c81286f6b97b;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index cf96d47..e16949e 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,103 +1,49 @@ What's new ?

- What's new ? -

- The Jalview 2.7 release features new web services, and important - improvements to the way in which Jalview handles alignments and - associated PDB structures, as well as numerous minor improvements and - bug fixes. Version 2.7 of the JalviewLite applet also features a - significantly enhanced Javascript API enabling it to be more easily - integrated with javascript based web applications.
For full - details see the Jalview 2.7 - release history. -

- Highlights in Jalview Desktop Version 2.7 + What's new ?
Jalview 2.8.1 includes a range of new features developed in the last 12 months.
As usual you can find the + highlights below, and the comprehensive list is given in the Jalview 2.8.1 Release Notes.

New structure viewer - options: -
- Colour and superimpose 3D structures of complexes and - multi-domain chains using several different alignments
- Drag and drop to associate PDB files with sequences that - have the same name
- Open and superimpose all associated structures for the - current selection
-
New web services for alignment - analysis
Improved graphical user interface for JABAWSservices. -
Sort associated alignment views option in tree viewer
Default colours for shading alignment - by quantitative annotation. -
Jalview Desktop RSS - reader - following important updates at http://www.jalview.org/feeds/desktop/rss -

- + Internationalisation

- Issues Resolved (a select list - see the release history for full details) - + In August 2013, David RÃ³ldan-Martinez took on the task of + internationalising Jalview's user interface. He also recruited Sara + HernÃ¡ndez DÃaz and Laura Ferrandis Martinez who created Jalview's + first spanish user interface translation.
If you notice any + problems, or would like to help translate Jalview's user interface + into other languages, please sign up at issues.jalview.org and put in + a feature request for your translation to the i18n component, and + David or Jim will get in contact with you.

- Issues in the Jalview Desktop -

Problems viewing associated structures for sequences - retrieved from UNIPROT
Problems viewing Jalview projects from older versions in - version 2.6
Preservation of hidden annotation rows and tree bootstrap - values in projects
Newly added JABAWS servers not always visible in web services - menu

- Issues specific to the JalviewLite Applet + Enhancements and new features

Layout problems when lots of annotation rows are displayed
<= shown as = in annotation row tooltip
export features raises exception when no features exist
relative URLs not handled properly when used in parameters - and annotation files
+
Extended the feature settings dialog to allow columns to be selected containing particular sequence features.

- Issues affecting both applet and application + Bug fixes

sequence numbering not preserved in MSF alignment output
sequence associated secondary structure not correctly parsed - in interleaved stockholm
sequences containing lowercase letters are not properly - associated with their pdb files
Jalview PDB file reader does not extract sequence from deoxy - nucleotide chains correctly
Sequence length given in alignment properties window is off - by 1