What's new

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=fe70fb48d89f1d03410c47b15e2785e9726a6399;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=dc956a97fb188bc7cbcd1bd5225fd89eefb80a81;hpb=1ccaed89cec493136eb0f5ac22f2942dd8ce9bb0;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index dc956a9..fe70fb4 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,30 +1,74 @@ - -What's new - -

What's new

If you can read this then you'll already have seen some of the recent changes - made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments - in the Java programming language. For instance Jalview is now a multi windowed - application, this keeps all your Jalview windows neatly together in one main - application window.

If you were familiar with the original Jalview, here is a list of important - features you should know about the current development:

Editing sequences is no longer the default when mouse clicking the alignment. - Instead, mouse clicking on the alignment will create a "selection region" - which may be full sequences or groups of residues.
To edit a sequence, the "Shift" key must be held down
To edit groups, either the "Alt" key or the "Control" - key must be held down.
Colours maybe applied to the background, ie the whole alignment, or to selected - regions. If the tickbox "Apply colour to all groups" is ticked (this - is the default), then the colour will be applied to all groups.
Use the right mouse button (apple and click on the mac) to define a selected - region on the alignment as a new group.
Conservation is automatically updated whenever the alignment is edited
There is no "quick draw" option
Edits can be undone! (and redone)

- - + + + +What's new ? + + +

+ What's new ?

+ Jalview 2.8.1 includes new features for group creation, RNA secondary + structure prediction and a host bug fixes. It also includes support + for version 2.1 + of JABA and includes a Spanish translation of its user interface.
+ The highlights are detailed below, and the full list is given in the Jalview 2.8.1 Release Notes. +

The Desktop and web based applet include new keystrokes for + defining and undefining groups, and PAM250 has been added to the range + of score models available for use by the tree and PCA calculations. + The Jalview project file format has also been extended for handling + RNA and protein secondary structure annotation, in anticipation for + new structure based secondary structure support in Jalview 2.8.2.

Internationalisation

Jalview 2.8.1 is the first release to include support for + displaying Jalview's user interface in different languages. In August + 2013, David Roldán-Martinez took on the task of + internationalising Jalview's user interface. He also recruited Sara + Hernández Díaz and Laura Ferrandis Martinez who created + Jalview's first spanish user interface translation.

+ If you notice any problems, or would like to help translate Jalview's + user interface into other languages, head over to issues.jalview.org and put in a + feature request describing the translations you can provide to the i18n + component. David has also documented + the process of creating i18n translations to help you get started. +

RNA Secondary Structure Prediction with JABA 2.1

+ This version of Jalview includes a client to access the new services available in JABA v2.1 , which + provides services for RNA consensus secondary structure prediction and + two new alignment programs (GLProbs and MSAProbs).

+ To see how to perform RNA secondary structure predictions like the one below, take a look at the RNAAliFold + client documentation. +

The RNAalifold client was implemented by Jalview's 2013 + summer student, Dan Barton. +

+ +