X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FwhatsNew.html;h=fff6ed920d7813a8a9edc155358ec32f549eb312;hb=bddc7dcaf05c8c66801badea47ee9b0c55ba70eb;hp=965edea3f8725be155776a0a09a739e9704d5d27;hpb=92ae1457a784553ccdb842b122d481ce6c5ff24f;p=jalview.git
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-What's new ?
+
+What's new ?
+
-What's new ?
-If you are reading this then you will already have seen some of the recent changes
- made to Jalview.
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window.
-If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:
+What's new ?
+Jalview Version 2.4
- - Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment creates a "selection region"
- which may be full sequences or groups of residues.
- - To insert or edit the gaps in one sequence in alignment, the
- "Shift" key must be held down when dragging the mouse.
- - To insert or edit gaps for a group of sequences, the
- "Alt" key (or in X windows the "Control"
- key) must be held down.
- - Selecting colour schemes in the colour menu either sets just the
- "background" colourscheme for the alignment, or - when
- the tickbox "Apply colour to all groups" is ticked,
- applies the scheme to the background and all groups defined on the alignment.
- - Use the right mouse button (apple and click on the Mac) whilst
- the pointer is within the selection area to access the "define" region menu to
- define a new region, give it a name, and change its colourscheme and display
- properties.
- - Conservation is automatically updated whenever the alignment is edited
- - There is no "quick draw" option
- - Edits can be undone, and redone!
+ VAMSAS Interoperation Client
+ DAS Sequence Fetching
+ DNA/Protein Product traversal (Experimental)
+ .. (more to come)
+Issues Resolved
+
+
+<--Jalview Version 2.3
+
+ Jmol 11.0.2 integration
+ PDB views stored in Jalview XML files
+ Slide sequences
+ Edit sequence in place
+ EMBL CDS features
+ DAS Feature mapping
+ Feature ordering
+ Alignment Properties
+ Annotation Scores
+ Sort by scores
+ Feature/annotation editing in applet
+
+Issues Resolved
+
+ Headless state operation in 2.2.1
+ Incorrect and unstable DNA pairwise alignment
+ Cut and paste of sequences with annotation
+ Feature group display state in XML
+ Feature ordering in XML
+ 2.2.1 applet had no feature transparency
+ Number pad keys can be used in cursor mode
+ Structure Viewer mirror image resolved
+
-->
+
+See the Release History page for
+details of all new features and resolved issues.