X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fmarkdown%2Freleases%2Frelease-2_11_3_0.md;h=a5ff3c6a7336a434328af96b0dd73eca29ed3717;hb=cf8648736bfb4a2f0f20fa39424d52a90f5a6035;hp=969c53f18d47d6f4e9b36b948e87afe8735b589d;hpb=fa35c4093e7b2ff0d572a59b253a3d9f2597bc69;p=jalview.git diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md index 969c53f..a5ff3c6 100644 --- a/help/markdown/releases/release-2_11_3_0.md +++ b/help/markdown/releases/release-2_11_3_0.md @@ -70,6 +70,8 @@ channel: "release" - Prevent gradle test on macOS continuously grabbing focus - Allow gradle build to create suffixed DEVELOP-... builds with channel appbase - Jalview bio.tools description maintained under jalview's git repo and bundled with source release +- Output stderr and stdout when running tests via gradle +- New gradle task providing runtime acceptance test for JalviewJS based on Chromium for Tests (still work in progress) ## Issues Resolved - Jmol view not always centred on structures when multiple structures are viewed @@ -96,6 +98,10 @@ channel: "release" - macOS Dock and KDE taskbar names Jalview icon "java" when running - HeadlessException in console in headless mode (actually fixed in 2.11.{0,1,2)) - Groovy console does not open when Jalview launched from jalview's Java 11 executable jar (available via conda) for recent versions of groovy +- Don't offer View model page for sources that do not have model pages +- Java Console opening at startup with the exampleFile_v2_7.jvp opening (nearly always) causes Jalview to hang +- automatic positioning of ID width for imported project can fail for certain font size configured in User preferences (affects most versions of Jalview prior to 2.11.3.0) +- RNAML import missing terminal residue ## New Known defects - EBI-AlphaFold PLDDT colours cannot be overlaid on alignment via 'Colour by annotation' unless the alignment's colourscheme has been set to 'None' via the Colours menu. @@ -108,6 +114,7 @@ channel: "release" - Files opened via command line with a relative path are added as relative paths to Recent files list (since 2.0.x) - Test coverage for ID width adjustment disabled pending fix for new annotation label geometry and width calculation - scripts adding new fileformats or colourschemes do not work when run via command line +- Headless alignment export with structure annotations doesn't include secondary structure and temperature factor