X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fmarkdown%2Freleases%2Frelease-2_9_0b1.md;fp=help%2Fmarkdown%2Freleases%2Frelease-2_9_0b1.md;h=d20bbd1f24c2cf24665a420c4e429182b5689741;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=0000000000000000000000000000000000000000;hpb=5b27f1062b2203c4c31702e205f4c78e1992063e;p=jalview.git

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+---
+channel: release
+version: 2.9.0b1
+date: 2015-10-08
+---
+
+## New Features
+
+
+
+### General
+- Updated Spanish translations of localized text for 2.9
+
+
+### Application
+- Signed OSX InstallAnywhere installer<br/>
+- Support for per-sequence based annotations in BioJSON
+
+
+### Applet
+- Split frame example added to applet examples page
+
+
+### Build and Deployment
+- <!--  JAL-1888 -->  New ant target for running Jalview's test suite
+
+
+## Issues Resolved
+
+
+
+### General
+  - Mapping of cDNA to protein in split frames incorrect when sequence start > 1
+  - Broken images in filter column by annotation dialog documentation
+  - Feature colours not parsed from features file
+  - Exceptions and incomplete link URLs recovered when loading a features file containing HTML tags in feature description
+
+
+### Application
+  - Annotations corrupted after BioJS export and reimport
+  - Incorrect sequence limits after Fetch DB References with 'trim retrieved sequences'
+  - Incorrect warning about deleting all data when deleting selected columns
+  - Patch to build system for shipping properly signed JNLP templates for webstart launch
+  - EMBL-PDBe fetcher/viewer dialogs do not offer unreleased structures for download or viewing
+  - Tab/space/return keystroke operation of EMBL-PDBe fetcher/viewer dialogs works correctly
+  - Disabled 'minimise' button on Jalview windows running on OSX to workaround redraw hang bug
+  - Split cDNA/Protein view position and geometry not recovered from jalview project
+  - Initial enabled/disabled state of annotation menu sorter 'show autocalculated first/last' corresponds to alignment view
+  - Restoring of Clustal, RNA Helices and T-Coffee color schemes from BioJSON
+
+
+### Applet
+  - Reorder sequences mirrored in cDNA/Protein split frame
+  - Applet with Jmol examples not loading correctly