X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=optimization%2Ffull-profile-ENSG000000157764-to-display-chrome.txt;fp=optimization%2Ffull-profile-ENSG000000157764-to-display-chrome.txt;h=ae9c4cc2463dcec371301a41cd96fe70e9e34e51;hb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;hp=0000000000000000000000000000000000000000;hpb=9dabc02511e3a334a5749a504f57f69d6c9017bd;p=jalview.git diff --git a/optimization/full-profile-ENSG000000157764-to-display-chrome.txt b/optimization/full-profile-ENSG000000157764-to-display-chrome.txt new file mode 100644 index 0000000..ae9c4cc --- /dev/null +++ b/optimization/full-profile-ENSG000000157764-to-display-chrome.txt @@ -0,0 +1,511 @@ + Total new objects: 3207143 + +count exec(ms) +-------- -------- ------------------------------ +...2100182 ....-24750 undefined[] +....504006 ......2661 java.lang.StringBuilder +....436463 ......1022 java.util.HashMap.Node +....411205 .......708 jalview.datamodel.Annotation +....232907 .......323 Float +....215619 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+.......276 .........4 java.util.TreeMap.EntryIterator +.......274 ........-5 java.awt.Component[] +.......261 .........2 java.beans.PropertyChangeSupport +.......261 .........1 java.beans.PropertyChangeSupport.PropertyChangeListenerMap +.......226 .........1 java.util.Collections.UnmodifiableSet +.......219 .........0 com.stevesoft.pat.StrPos +.......206 .........1 java.awt.AWTEventMulticaster +.......200 .........2 java.util.HashMap.KeySet +.......200 .........2 java.util.HashMap.KeyIterator +.......198 .........4 javax.swing.plaf.ComponentInputMapUIResource +.......187 .........2 java.util.Arrays.ArrayList +.......182 .........2 java.awt.event.ContainerEvent +.......176 ........-3 java.util.Hashtable.Entry[] +.......173 .........1 javax.swing.ActionMap +.......173 ........-2 javax.swing.KeyStroke[] +.......171 .........2 java.awt.Insets +.......169 .........2 javax.swing.JMenuItem.MenuItemFocusListener +.......169 .........2 javax.swing.AbstractButton.Handler +.......169 .........1 swingjs.plaf.ButtonListener +.......154 .........1 javax.swing.KeyboardManager.ComponentKeyStrokePair +.......138 .........1 jalview.datamodel.PDBEntry +.......136 .........1 java.util.Vector.Itr +.......130 .........1 javajs.util.SB +.......120 .........2 java.io.BufferedInputStream +.......120 .........1 java.io.ByteArrayInputStream +.......116 .........2 javax.swing.DefaultButtonModel +.......112 .........2 java.lang.StringBuffer +.......108 .........3 java.awt.EventDispatchThread$1 +.......100 .........1 jalview.datamodel.features.FeatureStore$SearchCriterion$2 +........99 .........1 javax.swing.event.ChangeEvent +........94 .......514 javax.swing.JMenuItem +........91 .........2 java.awt.event.MouseEvent +........88 .........2 java.util.Hashtable +........88 .........0 java.util.TreeMap.Entry +........77 .........0 javax.swing.ArrayTable +........72 .........2 jalview.datamodel.features.FeatureStore +........72 .........1 java.util.TreeMap +........69 ........-1 java.util.concurrent.ConcurrentHashMap.HashEntry[] +........67 .......277 jalview.datamodel.Sequence +........67 ........18 jalview.datamodel.features.SequenceFeatures +........66 .........2 java.net.URL +........64 .........1 javajs.util.AjaxURLConnection +........64 .........0 java.util.concurrent.ConcurrentHashMap.Segment +........63 ........-1 jalview.datamodel.SequenceGroup[] +........60 .........2 java.util.Collections$UnmodifiableCollection$1 +........60 .........0 javax.swing.SizeRequirements +........57 .........2 java.awt.EventDispatchThread +........57 .........1 java.awt.EventDispatchThread.HierarchyEventFilter +........54 .........3 swingjs.json.JSON.JSONReader +........53 .........1 javax.swing.JToggleButton.ToggleButtonModel +........53 .........1 java.util.ArrayList.ListItr +........53 ........-1 swingjs.api.js.DOMNode[] +........51 .........0 java.awt.EventQueueItem +........51 ........-1 jalview.datamodel.SequenceI[] +........44 .........0 jalview.util.LinkedIdentityHashSet.IdentityWrapper +........39 .........4 jalview.datamodel.HiddenColumnsCursor +........38 .........0 java.lang.StackTraceElement +........35 ........90 javax.swing.JCheckBoxMenuItem +........34 .........5 jalview.util.MapList +........33 .........2 jalview.ext.ensembl.EnsemblXref +........33 .........1 java.util.StringTokenizer +........33 .........1 jalview.datamodel.Sequence.DBModList +........33 .........0 jalview.renderer.ScaleRenderer.ScaleMark +........32 .........0 java.util.Collections.SynchronizedRandomAccessList +........31 .........0 java.lang.reflect.Constructor +........31 .........0 java.awt.Point +........31 .........0 com.stevesoft.pat.oneChar +........30 .........0 javax.swing.KeyStroke +........30 .........0 javax.swing.ComponentInputMap +........28 .........0 com.stevesoft.pat.patInt +........27 .........0 java.util.Vector +........24 .........1 javax.swing.DefaultSingleSelectionModel +........23 .........1 java.util.SubList$1 +........23 .........0 java.util.TreeMap.Values +........23 .........0 java.util.TreeMap.EntrySet +........23 .........0 java.util.AbstractList.ListItr +........23 .........0 jalview.datamodel.Mapping +........22 .........8 javax.swing.JPopupMenu +........22 .........5 javax.swing.JPopupMenu.Separator +........22 .........1 javax.swing.JMenu.MenuChangeListener +........22 .........1 java.util.TimSort +........22 .........1 java.util.RandomAccessSubList +........22 .........0 swingjs.plaf.JSPopupMenuUI.JSMenuKeyListener +........22 .........0 javax.swing.JMenu.WinListener +........21 ........16 javax.swing.JMenu +........21 .........1 jalview.ext.ensembl.EnsemblProtein +........21 .........1 jalview.ext.ensembl.EnsemblCdna +........20 .........0 java.awt.FlowLayout +........18 ........98 javax.swing.JRadioButtonMenuItem +........18 .........0 java.util.Formatter.Flags +........18 .........0 java.awt.event.ItemEvent +........18 .........0 java.awt.event.InvocationEvent +........18 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sun.java2d.StateTrackableDelegate +.........5 .........0 javax.swing.event.InternalFrameEvent +.........5 .........0 java.awt.RenderingHints +.........5 .........0 jalview.renderer.ResidueShader +.........5 .........0 Boolean +.........4 .........2 javax.swing.JLabel +.........4 .........1 java.util.concurrent.ConcurrentHashMap +.........4 .........1 jalview.analysis.AnnotationSorter +.........4 .........0 sun.java2d.StateTrackable.State +.........4 .........0 javax.swing.JScrollBar.ModelListener +.........4 .........0 java.util.concurrent.ConcurrentHashMap.Segment[] +.........4 .........0 java.awt.geom.RectIterator +.........4 .........0 java.awt.event.AdjustmentEvent +.........4 .........0 jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType +.........4 .........0 jalview.analysis.AnnotationSorter$3 +.........4 .........0 jalview.analysis.AnnotationSorter$2 +.........4 .........0 jalview.analysis.AnnotationSorter$1 +.........4 .........0 com.stevesoft.pat.End +.........4 ........-2 jalview.datamodel.Annotation[] +.........3 ........81 java.awt.image.BufferedImage +.........3 .........9 java.awt.image.DataBufferInt +.........3 .........5 java.awt.image.DirectColorModel +.........3 .........0 swingjs.JSToolkit$1 +.........3 .........0 sun.font.FontDesignMetrics.KeyReference +.........3 .........0 sun.font.FontDesignMetrics +.........3 .........0 javax.swing.ButtonGroup +.........3 .........0 java.util.regex.Matcher +.........3 .........0 java.util.Collections.SynchronizedSet +.........3 .........0 java.awt.image.SinglePixelPackedSampleModel +.........3 .........0 java.awt.GridLayout +.........3 .........0 jalview.schemes.NucleotideColourScheme +.........3 .........0 jalview.renderer.ScaleRenderer +.........3 .........0 jalview.gui.AnnotationPanel.DragMode +.........3 .........0 jalview.datamodel.features.FeatureAttributes.Datatype +.........3 .........0 jalview.datamodel.VisibleContigsIterator +.........3 .........0 jalview.datamodel.StartRegionIterator +.........3 .........0 jalview.analysis.AnnotationSorter.SequenceAnnotationOrder +.........2 .........8 javax.swing.JScrollBar +.........2 .........7 javax.swing.JScrollPane.ScrollBar +.........2 .........7 javax.swing.JProgressBar +.........2 .........2 java.lang.IndexOutOfBoundsException +.........2 .........2 com.stevesoft.pat.Regex +.........2 .........1 jalview.datamodel.AlignmentAnnotation +.........2 .........0 javax.swing.text.AbstractDocument.DefaultDocumentEvent +.........2 .........0 javax.swing.event.UndoableEditEvent +.........2 .........0 javax.swing.border.LineBorder +.........2 .........0 javax.swing.JProgressBar.ModelListener +.........2 .........0 java.util.LinkedHashMap.LinkedValues +.........2 .........0 java.util.LinkedHashMap.LinkedValueIterator +.........2 .........0 java.util.IdentityHashMap.KeyIterator +.........2 .........0 java.util.Hashtable.KeySet +.........2 .........0 java.util.Collections.SynchronizedCollection +.........2 .........0 java.util.Collections.SingletonList +.........2 .........0 java.util.Collections$1 +.........2 .........0 java.util.ArrayDeque +.........2 .........0 java.lang.Thread +.........2 .........0 java.lang.StackTraceElement[] +.........2 .........0 java.awt.geom.Path2D.Float.CopyIterator +.........2 .........0 java.awt.geom.Path2D.Float +.........2 .........0 java.awt.event.ActionEvent +.........2 .........0 java.awt.Container +.........2 .........0 jalview.util.IntRangeComparator +.........2 .........0 jalview.io.SequenceAnnotationReport +.........2 .........0 jalview.gui.AlignmentPanel[] +.........2 .........0 jalview.ext.ensembl.EnsemblSequenceFetcher.EnsemblFeatureType[] +.........2 .........0 jalview.ext.ensembl.EnsemblLookup +.........2 .........0 jalview.datamodel.features.RangeComparator +.........2 .........0 jalview.datamodel.SearchResults +.........2 .........0 jalview.datamodel.AlignmentAnnotation[] +.........2 .........0 jalview.controller.AlignViewController +.........2 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