X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2FGeneticCodes.dat;fp=resources%2FGeneticCodes.dat;h=4735cf274ddbcfa986f7cb0f367dba1cea8efe82;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=0000000000000000000000000000000000000000;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git diff --git a/resources/GeneticCodes.dat b/resources/GeneticCodes.dat new file mode 100644 index 0000000..4735cf2 --- /dev/null +++ b/resources/GeneticCodes.dat @@ -0,0 +1,327 @@ +-- source: ftp://ftp.ncbi.nih.gov/entrez/misc/data/gc.prt (19th March 2018) +-- SGC3 name edited slightly so as to fit all on one line +--************************************************************************** +-- This is the NCBI genetic code table +-- Initial base data set from Andrzej Elzanowski while at PIR International +-- Addition of Eubacterial and Alternative Yeast by J.Ostell at NCBI +-- Base 1-3 of each codon have been added as comments to facilitate +-- readability at the suggestion of Peter Rice, EMBL +-- Later additions by Taxonomy Group staff at NCBI +-- +-- Version 4.2 +-- Added Karyorelict nuclear genetic code 27 +-- Added Condylostoma nuclear genetic code 28 +-- Added Mesodinium nuclear genetic code 29 +-- Added Peritrich nuclear genetic code 30 +-- Added Blastocrithidia nuclear genetic code 31 +-- +-- Version 4.1 +-- Added Pachysolen tannophilus nuclear genetic code 26 +-- +-- Version 4.0 +-- Updated version to reflect numerous undocumented changes: +-- Corrected start codons for genetic code 25 +-- Name of new genetic code is Candidate Division SR1 and Gracilibacteria +-- Added candidate division SR1 nuclear genetic code 25 +-- Added GTG as start codon for genetic code 24 +-- Corrected Pterobranchia Mitochondrial genetic code (24) +-- Added genetic code 24, Pterobranchia Mitochondrial +-- Genetic code 11 is now Bacterial, Archaeal and Plant Plastid +-- Fixed capitalization of mitochondrial in codes 22 and 23 +-- Added GTG, ATA, and TTG as alternative start codons to code 13 +-- +-- Version 3.9 +-- Code 14 differs from code 9 only by translating UAA to Tyr rather than +-- STOP. A recent study (Telford et al, 2000) has found no evidence that +-- the codon UAA codes for Tyr in the flatworms, but other opinions exist. +-- There are very few GenBank records that are translated with code 14, +-- but a test translation shows that retranslating these records with code +-- 9 can cause premature terminations. Therefore, GenBank will maintain +-- code 14 until further information becomes available. +-- +-- Version 3.8 +-- Added GTG start to Echinoderm mitochondrial code, code 9 +-- +-- Version 3.7 +-- Added code 23 Thraustochytrium mitochondrial code +-- formerly OGMP code 93 +-- submitted by Gertraude Berger, Ph.D. +-- +-- Version 3.6 +-- Added code 22 TAG-Leu, TCA-stop +-- found in mitochondrial DNA of Scenedesmus obliquus +-- submitted by Gertraude Berger, Ph.D. +-- Organelle Genome Megasequencing Program, Univ Montreal +-- +-- Version 3.5 +-- Added code 21, Trematode Mitochondrial +-- (as deduced from: Garey & Wolstenholme,1989; Ohama et al, 1990) +-- Added code 16, Chlorophycean Mitochondrial +-- (TAG can translated to Leucine instaed to STOP in chlorophyceans +-- and fungi) +-- +-- Version 3.4 +-- Added CTG,TTG as allowed alternate start codons in Standard code. +-- Prats et al. 1989, Hann et al. 1992 +-- +-- Version 3.3 - 10/13/95 +-- Added alternate intiation codon ATC to code 5 +-- based on complete mitochondrial genome of honeybee +-- Crozier and Crozier (1993) +-- +-- Version 3.2 - 6/24/95 +-- Code Comments +-- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro... +-- 15 Blepharisma Macro.. code added +-- 5 Invertebrate Mito.. GTG allowed as alternate initiator +-- 11 Eubacterial renamed to Bacterial as most alternate starts +-- have been found in Archea +-- +-- +-- Version 3.1 - 1995 +-- Updated as per Andrzej Elzanowski at NCBI +-- Complete documentation in NCBI toolkit documentation +-- Note: 2 genetic codes have been deleted +-- +-- Old id Use id - Notes +-- +-- id 7 id 4 - Kinetoplast code now merged in code id 4 +-- id 8 id 1 - all plant chloroplast differences due to RNA edit +-- +--************************************************************************* + +Genetic-code-table ::= { + { + name "Standard" , + name "SGC0" , + id 1 , + ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "---M------**--*----M---------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Vertebrate Mitochondrial" , + name "SGC1" , + id 2 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG", + sncbieaa "----------**--------------------MMMM----------**---M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Yeast Mitochondrial" , + name "SGC2" , + id 3 , + ncbieaa "FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**----------------------MM----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Mold / Protozoan / Coelenterate Mitochondrial; Mycoplasma; Spiroplasma" , + name "SGC3" , + id 4 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--MM------**-------M------------MMMM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Invertebrate Mitochondrial" , + name "SGC4" , + id 5 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG", + sncbieaa "---M------**--------------------MMMM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear" , + name "SGC5" , + id 6 , + ncbieaa "FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Echinoderm Mitochondrial; Flatworm Mitochondrial" , + name "SGC8" , + id 9 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Euplotid Nuclear" , + name "SGC9" , + id 10 , + ncbieaa "FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Bacterial, Archaeal and Plant Plastid" , + id 11 , + ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "---M------**--*----M------------MMMM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Alternative Yeast Nuclear" , + id 12 , + ncbieaa "FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**--*----M---------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Ascidian Mitochondrial" , + id 13 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG", + sncbieaa "---M------**----------------------MM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Alternative Flatworm Mitochondrial" , + id 14 , + ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG", + sncbieaa "-----------*-----------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Blepharisma Macronuclear" , + id 15 , + ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------*---*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Chlorophycean Mitochondrial" , + id 16 , + ncbieaa "FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------*---*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Trematode Mitochondrial" , + id 21 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Scenedesmus obliquus Mitochondrial" , + id 22 , + ncbieaa "FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "------*---*---*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Thraustochytrium Mitochondrial" , + id 23 , + ncbieaa "FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--*-------**--*-----------------M--M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Pterobranchia Mitochondrial" , + id 24 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG", + sncbieaa "---M------**-------M---------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Candidate Division SR1 and Gracilibacteria" , + id 25 , + ncbieaa "FFLLSSSSYY**CCGWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "---M------**-----------------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Pachysolen tannophilus Nuclear" , + id 26 , + ncbieaa "FFLLSSSSYY**CC*WLLLAPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**--*----M---------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Karyorelict Nuclear" , + id 27 , + ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Condylostoma Nuclear" , + id 28 , + ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**--*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Mesodinium Nuclear" , + id 29 , + ncbieaa "FFLLSSSSYYYYCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Peritrich Nuclear" , + id 30 , + ncbieaa "FFLLSSSSYYEECC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Blastocrithidia Nuclear" , + id 31 , + ncbieaa "FFLLSSSSYYEECCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } +}